LOC110490133 (lyplal1)


Basic Information

Item Value
gene id LOC110490133
gene name lyplal1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43125698 ~ 43131145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110490133
gtctgtctgctctgtagtCTCGCGCGACACTAACAGAAGTCATGGCTGCCGTACGGAGCAGCAAACTTCTACACAAGTGTGTTGCATCTCCAACGTGGAAAGACTCTGCATCAGTCATCTTCTTACACGGCTCAGGAGCCACTGGACAGTGAGTGCGAGCATGGGTCAAAGAGGTTTCGTTACCAGACCTGGCTTTCCCCCCACATCAGAGTGGTATATCCCACAGCCCTAGCCAGGCCATACACACCCATGCGGGGGGTTCTGTCCAATGTGTGGTTTGACCGCTACAAAATCTCACGGGACTGTCTGGAGCACTTGGAGTCTATAGACGCCATTGGCCAACTCCCTGGGAGCGGGCATACAGGCGGAGGTCAGGGCAGGAGTACCTAAACACAGGATGATCATAGGGGGTTTCTCTATGGGCGGAGCTATGGCCCTCCACCTAGTGTGCCGTTATCACCGTGGCGTAGCAGGAGTCTTTGCTCTGTCCAGCTTTCTCAACAAGGACTGTAGTATATCAGGCTGTGGAGGAGAGGGCAGGGGCGGGGAGCCCCCTCCCAGAGCTGTTCCAGGGCCATGGGACAGGAGACGAGTTGGTGTTCCATAAGTGGGGAGGAGAAACTACGGCAGTGCTGAAGAAGGCTGGGATGACGACCACCTTCCACTCGTTCCAAGGTCTCCAGCACCAGCTCTTCCAGCCAGAGATTGAGCTACTGCGCTCCTGGATCCTCACCAAGCTGCTCCCGGATCCTCACCAAGCTGCTCCCGGACAGTCTAGATGCTAGTGGGCAGTGACCAGTCAGCCCCACACCACTAAACAGACACATTAACCATATGTTATTAACACGTTAATAACACGTTCACACTATTGAGCTGATTTAAACTGAGCCAAACCAAACTGTACTGCGCTGGCCTGGTAGAGCATTGCCCATAGTTTCTGGAACAAAGCTGGAAAAGCGAGCCAACACGGTTTGGTCGGTATTATAGTGCGAAAAGGATATTAACGTGCTGAGTGGGCTGTGGACCACCTCCTCACAACCTCTTGGACATAATACCGTTTTTAAAAAATTaagtgtcaataaaaaaaaatgtttttgcttggATACTGTCCGTTGTGCTTGCGTAGTGTACTCAACAGCTGTGTAGTTCCCTTCAAAAGAGAACATGTGATAGTTGAGTGTGCTTATAACCACTCCCTCTGCACTAGTACAGTGTCCACTCTTAACACTTCAGcctcgtctgtctgtctatgaTAGGATATGGGAGCATGCTCTGCCTCCACCCCTATAGTCTATAACTAACACTGGAGTCAGATTAGTATCGTTTCTGTAGAGAGAACAGGAATTGTTAGGTCAATCTTGTGCTCGCTCGTTTTTTTTTATACACCATTATCGTTTTGTGCTGGGAAATGTGTTGAACATGTGTGGGGACGGAGGGAGCTATTCTGTTTGCTCAGTAGTTCTGCTCCGTAGAACGCATCGCTTCATTGATGGTTAGTGGGAGGAAGCGGTTAGCTATTCCTCCCTTCTTCCGCCCAGCAGCCTCTCTCTCAGCGTTGTGCTTAAGGTAGTCCGGATGTTGGGCTGCCTTCACTAGTATAGGGCTGCAGGCCAGGGTAAAAACACAGGAATATCATGAGTGAGCAGTAGTAACACTTAGGTGCCAAACATAATGAGAGTTATGGAAATTATTAACGTTTCTTGTATAGCCCTGGCTATAAATTAAACAACTGTCAACATCA
>TU167202
GGCTGCCGTACGGAGCAGCAAACTTCTACACAAGTGTGTTGCATCTCCAACGTGGAAAGACTCTGCATCAGTCATCTTCTTACACGGCTCAGGAGCCACTGGACAGTGAGTGCGAGCATGGGTCAAAGAGGTTTCGTTACCAGACCTGGCTTTCCCCCCACATCAGAGTGGTATATCCCACAGCCCTAGCCAGGCCATACACACCCATGCGGGGGGTTCTGTCCAATGTGTGGTTTGACCGCTACAAAATCTCACGGGACTGTCTGGAGCACTTGGAGTCTATAGACGCCATTGGCCAACTCCCTGGGAGCGGGCATACAGGCGGAGGTCAGGGCAGGAGTACCTAAACACAGGATGATCATAGGATGATGGGTACTTGCACACTTTCCCAGATGTACGCTGTGTGCCCAGATGTACCCAGATGTGTGAGATTAAGGACGGGCTCGTGAACGGATGCCGACTCCTGAGGAGCGAAGAAGCTGATGATGTGGAACTAAGGAatgttttttcttttctttcgCAGTCAAAGGCAGAGTATTTTCCACTTCGGACCGCTTAAACTGCCAGGATGGCTTAAGCTACTGTTACTCATACATAATAATAAATGAATATATTTATTATGTCGCTACATTATATTATTCCCAATATGCACCGTTGAAAAATGTGATCTTCCCGTGAAAAGCACTTGGGATACAATATTCAATACACATTTTCAGTGAATACCTGCAGAAAGAGACCTAATGGACCCAGTACAATGACATGttctgttttgtcttgttcctcGTCCAAAGGGGGTTTCTCTATGGGCGGAGCTATGGCCCTCCACCTAGTGTGCCGTTATCACCGTGGCGTAGCAGGAGTCTTTGCTCTGTCCAGCTTTCTCAACAAGGACTGTAGTATATCAGGCTGTGGAGGAGAGGGCAGGGGCGGGGAGCCCCCTCCCAGAGCTGTTCCAGGGCCATGGGACAGGAGACGAGTTGGTGTTCCATAAGTGGGGAGGAGAAACTACGGCAGTGCTGAAGAAGGCTGGGATGACGACCACCTTCCACTCGTTCCAAGGTCTCCAGCACCAGCTCTTCCAGCCAGAGATTGAGCTACTGCGCTCCTGGATCCTCACCAAGCTGCTCCCGGATCCTCACCAAGCTGCTCCCGGACAGTCTAGATGCTAGTGGGCAGTGACCAGTCAGCCCCACACCACTAAACAGACACATTAACCATATGTTATTAACACGTTAATAACACGTTCACACTATTGAGCTGATTTAAACTGAGCCAAACCAAACTGTACTGCGCTGGCCTGGTAGAGCATTGCCCATAGTTTCTGGAACAAAGCTGGAAAAGCGAGCCAACACGGTTTGGTCGGTATTATAGTGCGAAAAGGATATTAACGTGCTGAGTGGGCTGTGGACCACCTCCTCACAACCTCTTGGACATAATACCGTTTTTAAAAAATTaagtgtcaataaaaaaaaatgtttttgct
>TU167203
GGCTGCCGTACGGAGCAGCAAACTTCTACACAAGTGTGTTGCATCTCCAACGTGGAAAGACTCTGCATCAGTCATCTTCTTACACGGCTCAGGCCATACACACCCATGCGGGGGGTTCTGTCCAATGTGTGGTTTGACCGCTACAAAATCTCACGGGACTGTCTGGAGCACTTGGAGTCTATAGACGCCATTGGCCAACTCCCTGGGAGCGGGCATACAGGCGGAGGTCAGGGCAGGAGTACCTAAACACAGGATGATCATAGGATGATGGGTACTTGCACACTTTCCCAGATGTACGCTGTGTGCCCAGATGTACCCAGATGTGTGAGATTAAGGACGGGCTCGTGAACGGATGCCGACTCCTGAGGAGCGAAGAAGCTGATGATGTGGAACTAAGGAatgttttttcttttctttcgCAGTCAAAGGCAGAGTATTTTCCACTTCGGACCGCTTAAACTGCCAGGATGGCTTAAGCTACTGTTACTCATACATAATAATAAATGAATATATTTATTATGTCGCTACATTATATTATTCCCAATATGCACCGTTGAAAAATGTGATCTTCCCGTGAAAAGCACTTGGGATACAATATTCAATACACATTTTCAGTGAATACCTGCAGAAAGAGACCTAATGGACCCAGTACAATGACATGttctgttttgtcttgttcctcGTCCAAAGGGGGTTTCTCTATGGGCGGAGCTATGGCCCTCCACCTAGTGTGCCGTTATCACCGTGGCGTAGCAGGAGTCTTTGCTCTGTCCAGCTTTCTCAACAAGGACTGTAGTATATCAGGCTGTGGAGGAGAGGGCAGGGGCGGGGAGCCCCCTCCCAGAGCTGTTCCAGGGCCATGGGACAGGAGACGAGTTGGTGTTCCATAAGTGGGGAGGAGAAACTACGGCAGTGCTGAAGAAGGCTGGGATGACGACCACCTTCCACTCGTTCCAAGGTCTCCAGCACCAGCTCTTCCAGCCAGAGATTGAGCTACTGCGCTCCTGGATCCTCACCAAGCTGCTCCCGGATCCTCACCAAGCTGCTCCCGGACAGTCTAGATGCTAGTGGGCAGTGACCAGTCAGCCCCACACCACTAAACAGACACATTAACCATATGTTATTAACACGTTAATAACACGTTCACACTATTGAGCTGATTTAAACTGAGCCAAACCAAACTGTACTGCGCTGGCCTGGTAGAGCATTGCCCATAGTTTCTGGAACAAAGCTGGAAAAGCGAGCCAACACGGTTTGGTCGGTATTATAGTGCGAAAAGGATATTAACGTGCTGAGTGGGCTGTGGACCACCTCCTCACAACCTCTTGGACATAATACCGTTTTTAAAAAATTaagtgtcaataaaaaaaaatgtttttgct

Function

symbol description
lyplal1 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLAL1 (lysophospholipase like 1).

NR:

description
lysophospholipase-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110490133 False 1741 mRNA 0.49 5 43125698 43131145
TU167202 False 1483 lncRNA 0.49 5 43126340 43131102
TU167203 True 1382 lncRNA 0.49 4 43126340 43131102

Neighbor

gene id symbol gene type direction distance location
LOC110490105 LOC106605024 coding downstream 36809 43056952 ~ 43088889 (-)
LOC110490115 LOC106605031 coding downstream 69429 43046413 ~ 43056269 (-)
LOC110490077 LOC106605036 coding downstream 105873 42998825 ~ 43019825 (-)
clec3ba tetn coding downstream 139147 42984409 ~ 42986551 (-)
LOC110501576 LOC106605029 coding downstream 163425 42922668 ~ 42962273 (-)
LOC110490140 LOC106605021 coding upstream 66443 43197588 ~ 43225313 (-)
rrp15 LOC106605018 coding upstream 96797 43227942 ~ 43236818 (-)
LOC110490160 LOC106605017 coding upstream 130021 43261166 ~ 43264245 (-)
LOC110490183 LOC106605015 coding upstream 241580 43372725 ~ 43392160 (-)
LOC110490218 NA coding upstream 473064 43604209 ~ 43608220 (-)
G145682 NA non-coding downstream 1052 43124311 ~ 43124646 (-)
G145678 NA non-coding downstream 5987 43119375 ~ 43119711 (-)
G145669 NA non-coding downstream 24989 43100481 ~ 43100709 (-)
G145604 NA non-coding downstream 27883 43096948 ~ 43097815 (-)
G145603 NA non-coding downstream 49023 43042847 ~ 43076675 (-)
G145688 NA non-coding upstream 4340 43135485 ~ 43185379 (-)
G145766 NA non-coding upstream 143574 43274719 ~ 43275284 (-)
G145769 NA non-coding upstream 222081 43353226 ~ 43359910 (-)
G145863 NA non-coding upstream 279222 43410367 ~ 43410694 (-)
G145010 NA other downstream 418419 42706818 ~ 42707279 (-)
LOC110489860 LOC106605053 other downstream 1395276 41714269 ~ 41730507 (-)
G142918 NA other downstream 2261977 40863214 ~ 40863721 (-)
LOC110489653 LOC106605072 other downstream 2884294 40224622 ~ 40298333 (-)
G141363 LOC106605077 other downstream 3360225 39763933 ~ 39765473 (-)
G145767 NA other upstream 139572 43270717 ~ 43272516 (-)
LOC110490298 LOC106605170 other upstream 644918 43776063 ~ 43783884 (-)
LOC110490352 NA other upstream 1303645 44434790 ~ 44464449 (-)
LOC110490449 scmh1 other upstream 1440803 44571948 ~ 44606865 (-)

Expression


Co-expression Network