LOC110490140 (LOC106605021)


Basic Information

Item Value
gene id LOC110490140
gene name LOC106605021
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43197588 ~ 43225313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563342.2
CTTATAAATATCGCTCTACAACCGGCCGCATGCTGTTGTGCCACTGGCAACATCAGCTCTGTGGACCGATTTTCAGCAAGAAGGGATGGAGGAACGCGTCCACGGTTTACCATTGTATTAAAAGGAATTATCTTTATAATTCAACGTACTTGCCATACTTTTGATTTTAATAATCCCGCACTTTCTCCATTTATATTGACCCAACACATGCGTTATAACAACTTTAATAGGTTATAATCTCCTCGAGACGACACCTTGCGAGTACCAGGACGGGTTGATTTTTGCACTGTTGTATGTTATTCTGTCAAGAACCGCAATGCAACTGCTCAGCGAAGCCCATCTTGAGATAGAGAAATCAAAGACGGACTTGTGCTGAGCGCGGTACTGGCCACAGTTGGAAAGCTCGCAGCGCTCTGATGCGGTGGAGGTGTGCGCTAACCCACAGGCTACACGTCTGTTCTGTACAACTGGAGATAGCGAGCTAGCTGGTTGTAGTTTGTTTTACTTCAAGGTTTTTGTATTAAACTTTCATTGCCATTTGATGGCCACAATTTGGTCTTTTTGTTTGGACAATTGTAACTTTACGCGCGTTTAGTATGCGTTTATTGTGAAGTGATTGGTAATATATATAGCCTACTGCTGCTGTCTGCTCCCCGTATAACGGATtttacagattatttcccttCCATGGTTGTTAAATGGATTTCCAGGTACATTTTGAAATACTGTGCTGAAACTGGGATCACAAAACTACCACGTTTCCCAATATTTAGGCTACAAGTAGTTAAGTGTGTAGGCCTATATTTagtggtaaaaaaaatacaatattttggctTTTTTTCATGTTTATATTGCCATTCTGTTATATCTAAATTCCCTTTCCAAGGCCGCTTTATCGTTTTTTGTCAAGATTTCAAGACGCTGCTGTAGTCTACTTTTAGAGTTCACAATGAACTACTGCGTTTTAAGTCTTCTCCTGACCTTGGATTTAGCCACTGTGGCCGTCAGTTTGTCTACATGCAGTACACTGGACATGGATCAGTTTATGAAAAAGCGCATAGAAGCCATCCGGGGACAGATACTGAGCAAGCTGAAGCTCACGAGCCCCCCGGAGACATACCCCAAACCCGAGGAGGTGTCGCGGGATATCATCGCCATCTATAACAGCACGAGGGACCTGTTGCAGGAGAAAGCCAACGAACGGGCAGCAACGTGTGAGCGCCAACGAAGCGAGGAGGAGTACTATGCAAAAGAGGTTCACAAAATCGACATGCAACCCCCCTACCCCTCtgagaATGTCATCTCTCCCACGCACTACAACCCATACTACAGACGGCTCACCTTCGACGTGACCTCCATGGAGAAGAATGCCTCTAACCTGGTCAAGGCTGAGCTACGCGTCTTCCGCCTCCAGAACACCAAGGCCCGCGTGTCTGAACAGAGGATTGAGCTGTACCAGATTTTAAGTCACAAGGACCTGGCTTCCCCGACGCAGCGCTACATCGACAGCAAGGTGGTGCGCACGCGCATGGAGGGGGAGTGGCTGTCTTTTGATGTGACAGAGGCAGTCAGTGAATGGTTGCTTCACAGAGACAGAAACAGTGGATTCAAGATCAGCTTGCACTGTCCGTGCTGCACGTTTGTTCCCTCAAACAACTACATCATCCCCAATAAGAGTGAGGAGCTGGAAACCCGCTTTGCAGGTATAGATGACAGCTTCCACCACAGCGGAGACCTGAAGGTGTATAGGAAACGGCGCCACAGCGCCCAGGCTCCACACCTGCTCATGATGCTGCTGCCCTCCTACCGCCTGGAGTCCCAGCACAAGAGCCACCGCTCCAAACGAGCCCTGGACGCTGCCTTCTGCTCCAGAAACGTCCAGGATAACTGCTGCTTGCGGTCGCTCTATATCGACTTCAAGAAGGATCTGGGCTGGAGGTGGATCCACGAGCCCAAGGGTTACAACGCTAACTTCTGCGCCGGGGCCTGTCCCTATCTATGGAGCGCCGACACCCAGCATTCCAAGGTGCTAGGTCTGTACAACACCATCAACCCGGAGGCGTCAGCATCGCCCTGCTGTGTGTCTCAGGATCTGGAACCTCTCACCATCCTCTACTACATCGGCAAGACCCCCAAGATAGAGCAGCTCTCCAACATGATCGTCAAGTCCTGCAAGTGCAGCTAGGAACTGTTACAAGGCAACACacatgtgcatacacacacattcatacacacgtGCAtattcagtcacacacacacacacttggatacACACAaattcagtcacacacacatgcgtacACACGTGTATGCACCcacccacacctacacacacatgtacacacacacacacataaatacacatactgtacatatacacacattcatccacaaacacatactgtactcacagTCAGTCACACGATCACTCTCCTGCACTATAGTAAAGACATATTTGATCTCCTACAAGCACAAATGGAAAAGGTGCTGAGCAGATCTAGGTACAGAAAACATGTCTCCCGaaacaaccatacacacacacacacacacacacgcgcacgtgcacacacacacacacacagctgtggctTTTGTACAGGCGTGCCTGTGTTTTTGTGTTTAGAAAGGCCCTGTTAACATGCCTCACCTCACACACTTGTCACACAAAGACGCAAGAGTACGGCAAACACTGGAAAAAAGTATACGTGTCTATATGTGAAATAATACGTCTGAGAAACAAAGACGACCGACCCCGGTTTCAACACTCAAAGCAAGCCATCTTCTTGATTTTCTTTGTCTCGTTTTGCATCCTTTTGAACCTATTGtaattttatattttgttttgatttttGATAATTGTGTTGCCTATTTAAAATCCAGTGTTTTATGGTTAGCACCCAAATTGTTTTCAAACTCTCTCGAGAAGAGGTGGATGAATCCACTCCCCATTGTCAGTTGACTAATATGTTATAACATAGTAATGTTATAATCTCGTCCCATATGCTGTTTATATGTGCTGTAACAGCCACGTAAAGGCAGAAAGAGGCTAGGAGCCTGTAAGAGGGAGactgcaagagagagacagaatgaaagAAAATAAGCACACCTAGTATGCCTACCTTTTCAACAGAGACTCATCCTCACACAGGCATATTCATTTTAAAAAAGCACACACCCATCCCAGACCCTGCAGCAGGCAACATATTCAGACTGCTGGAATGAACAGTTCtgacattttgattaaaaaaaaaaaaagtgtcccaAAGTACTGTTGATCTCTGTTTACCTTGTGCATTGAATCTTGAATGCTTTAGGGAGCCCAACAGTGATTCCATCAACTACACAAGGTAGGTCATCATAAACACACATTTAAGATTTCTGTGGATatgttggattgttcttattggAACAGGGTTGTCCTTGTCTATATGATGCAGTGGTATGGGAATGGGGAGGTATAGTAGTTGGGGAGGTATAGTAGTGTTGTAGTGATAATTAGAGAGAAGGGATACAATAGGTGAGAATGgacagtagatgggacctggttcAGAGATTCTCCATGAAcctttgataccattccataaGGTCTGAGATTGCTTTAGGTCGGAGGTCAAAAGGTCATATTTACAGGTGTGCAGTAGTTGTTATGGACACCAGCGTTGTATCTGCTCATTTGCATCTGAAATACTTCGTCTCGCCCGCCTCCCTCAAAGTGTAAAGCCATTATTCAGTCATAGTTTTTTTGTCCTTTGTAGGAATAAAAATTGTTGGATACAAAGAATTGCACTGACGCTATtttgattgttttttatttttttattagtcGTTACTTCCCCCTTATTAAATGAGGAGTGTTGATGATGTGACTTAGAGCAGGAAGTGTAGGTGACACTACCCCGCCCCTAACTCCACCCACCTTTGGGCACCCGCGCCAGTGGACTTCCTGGAAAACCAGGAAGAGGAGCGAGGCACCAATATTGTCATGATAGAGCTATTATTTttcgttgttgttgtttataataattatgtttttgttgttgtttgacccACTATGATGTATTGTAACACATTATTGTTGTTGTACTCTAGtggtaaataaattatttaaattaCAAGGGAATAACA
>TU167254
CTCGTTACAATAAATCGTCTCGTAACCTGAAGTTGAAGGAGTCCCCCGGTCAGAAAGTGACGACCACAACATCAATTTGAAGAAGGGGGAGCACGTGGTTAAGTAAGTCTTATAAATATCGCTCTACAACCGGCCGCATGCTGTTGTGCCACTGGCAACATCAGCTCTGTGGACCGATTTTCAGCAAGAAGGGATGGAGGAACGCGTCCACGGTTTACCATTGTATTAAAAGGAATTATCTTTATAATTCAACGTACTTGCCATACTTTTGATTTTAATAATCCCGCACTTTCTCCATTTATATTGACCCAACACATGCGTTATAACAACTTTAATAGGTTATAATCTCCTCGAGACGACACCTTGCGAGTACCAGGACGGGTTGATTTTTGCACTGTTGTATGTTATTCTGTCAAGAACCGCAATGCAACTGCTCAGCGAAGCCCATCTTGAGATAGAGAAATCAAAGACGGACTTGTGCTGAGCGCGGTACTGGCCACAGTTGGAAAGCTCGCAGCGCTCTGATGCGGTGGAGGTGTGCGCTAACCCACAGGCTACACGTCTGTTCTGTACAACTGGAGATAGCGAGCTAGCTGGTTGTAGTTTGTTTTACTTCAAGGTTTTTGTATTAAACTTTCATTGCCATTTGATGGCCACAATTTGGTCTTTTTGTTTGGACAATTGTAACTTTACGCGCGTTTAGTATGCGTTTATTGTGAAGTGATTGGTAATATATATAGCCTACTGCTGCTGTCTGCTCCCCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563342.2 False 4125 mRNA 0.45 7 43197588 43225205
TU167254 True 765 lncRNA 0.44 1 43224549 43225313

Neighbor

gene id symbol gene type direction distance location
LOC110490133 lyplal1 coding downstream 66443 43125698 ~ 43131145 (-)
LOC110490105 LOC106605024 coding downstream 108699 43056952 ~ 43088889 (-)
LOC110490115 LOC106605031 coding downstream 141319 43046413 ~ 43056269 (-)
LOC110490077 LOC106605036 coding downstream 177763 42998825 ~ 43019825 (-)
clec3ba tetn coding downstream 211037 42984409 ~ 42986551 (-)
rrp15 LOC106605018 coding upstream 2737 43227942 ~ 43236818 (-)
LOC110490160 LOC106605017 coding upstream 35961 43261166 ~ 43264245 (-)
LOC110490183 LOC106605015 coding upstream 147520 43372725 ~ 43392160 (-)
LOC110490218 NA coding upstream 379004 43604209 ~ 43608220 (-)
LOC110490284 rcc1 coding upstream 452950 43678155 ~ 43685499 (-)
G145688 NA non-coding downstream 12209 43135485 ~ 43185379 (-)
G145682 NA non-coding downstream 72942 43124311 ~ 43124646 (-)
G145678 NA non-coding downstream 77877 43119375 ~ 43119711 (-)
G145669 NA non-coding downstream 96879 43100481 ~ 43100709 (-)
G145766 NA non-coding upstream 49514 43274719 ~ 43275284 (-)
G145769 NA non-coding upstream 128021 43353226 ~ 43359910 (-)
G145863 NA non-coding upstream 185162 43410367 ~ 43410694 (-)
G145877 NA non-coding upstream 203995 43429200 ~ 43429496 (-)
G145882 NA non-coding upstream 208276 43433481 ~ 43433697 (-)
G145010 NA other downstream 490309 42706818 ~ 42707279 (-)
LOC110489860 LOC106605053 other downstream 1467166 41714269 ~ 41730507 (-)
G142918 NA other downstream 2333867 40863214 ~ 40863721 (-)
LOC110489653 LOC106605072 other downstream 2956184 40224622 ~ 40298333 (-)
G141363 LOC106605077 other downstream 3432115 39763933 ~ 39765473 (-)
G145767 NA other upstream 45512 43270717 ~ 43272516 (-)
LOC110490298 LOC106605170 other upstream 550858 43776063 ~ 43783884 (-)
LOC110490352 NA other upstream 1209585 44434790 ~ 44464449 (-)
LOC110490449 scmh1 other upstream 1346743 44571948 ~ 44606865 (-)

Expression


Co-expression Network