XLOC_020651 (ora1)


Basic Information

Item Value
gene id XLOC_020651
gene name ora1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 208644 ~ 209741 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040849
ATTCCAGCGGTGTGGGAGATGGACTTCAGAAAGCCTTGAAGACTCTTCAGAAAGTTTGCACTGTTGTGTCGTCTGTACTGTCGTGTGGTCTGGACCTCTATGGACCTGTGTGTCACCATCAAAGGCGTCTCCTTCCTGCTGCAGGCTGGTCTGGGGATACTGGCCAACGCACTGGTTCTGCTGGCGTATGCCCACATCCGTCTGGCGGAGGCGCGACTGCAGCCTGTGGATGCCATCCTGTGCCACCTGGCGCTGGTGgacttgctgctgctgctgactcGCGGTGTCCCGCAGACTATGACTGTGTTTGGCATGAGGAACCTGCTGGACGACACGGGCTGTAAGGTGGTGATCTACACGTACCGTATCGCCCGAGCGCTGTCCGTCTGCATCACCTGCATGCTGAGCGTGTTCCAGGCAGTGACGGTGGCGCCCGCGGCAGGACCGCTGCTATCCGGGGTGAAGGCCCGGCTCCCACAGCTGCTCGCGCCTACATTTGCAGCACTGTGGTTCATCAATATGGCCGTCTGCATAGCTGCCCCATTCTTCTCAGTGGCCCCTCGCAACGGCACCGTCCCACCATTCACGCTCAACCTGGGCTTCTGCCATGTGGACTTCCATGATAACCTGTCGTACGTGCTGAACGGGGTGGCCGTGTCGGTGCGGGACTTTGCCTTTGTGGGGGCGATGCTGGCCTCCAGCGGCTTCATCCTGCTGCTGCTCCACCGGCATCGCAGGCAGGTGCGGGCTGTCCGCCGTTCTCAGGGGTCCACCATGGAGACACGGGCCGCCAGGACGGTGCTGATGCTGGTAATTCTGTACTCCGTGTTTTTCGGCATCGATAACGTGATCTGGATCTACATGCTGACAGTGGCTCAGGTGCCGCCGGTGGTGGCCGACATGAGGGTGTTTTTCTCCTCGTGCTACGCCTCTCTCAGCCCGTTCCTCATCATCTCCTCCAACAGGAAGCTGAAAGCGAGGATGGTGTGCGCGACCTCAGAGCAGGAGCGGCAAGCGGAGGACGGCAAGAACTCCAGCGGCAAGAACTGAGCGCAGAGCTGATGTTATTTGTGTAGTGATGCAGATGTGGACGGCACT

Function

symbol description
ora1 Enables monocarboxylic acid binding activity; pheromone binding activity; and tyrosine binding activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of smell. Located in plasma membrane. Is expressed in female organism; male organism; olfactory epithelium; and olfactory rosette. Orthologous to several human genes including VN1R1 (vomeronasal 1 receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0019236 response to pheromone biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005550 pheromone binding molecular_function
GO:0016503 pheromone receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0033293 monocarboxylic acid binding molecular_function
GO:0072545 tyrosine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050510-2 Enables monocarboxylic acid binding activity; pheromone binding activity; and tyrosine binding activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of smell. Located in plasma membrane. Is expressed in female organism; male organism; olfactory epithelium; and olfactory rosette. Orthologous to several human genes including VN1R1 (vomeronasal 1 receptor 1).

Ensembl:

ensembl_id ENSDARG00000098601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040849 True 1098 mRNA 0.60 1 208644 209741

Neighbor

gene id symbol gene type direction distance location
XLOC_020650 fbxo42 coding downstream 15410 191931 ~ 193234 (-)
XLOC_020649 slc25a34 coding downstream 20532 184670 ~ 188112 (-)
XLOC_020648 fblim1 coding downstream 43700 158112 ~ 164944 (-)
XLOC_020647 si:ch1073-335m2.2 coding downstream 53017 130967 ~ 155627 (-)
XLOC_020646 NA coding downstream 107197 101082 ~ 101447 (-)
XLOC_020652 zgc:66156 coding upstream 16196 225937 ~ 237651 (-)
XLOC_020653 zgc:66156 coding upstream 44649 254390 ~ 263117 (-)
XLOC_020654 myhz1.1 coding upstream 58611 268352 ~ 278328 (-)
XLOC_020655 CABZ01079178.1 coding upstream 69049 278790 ~ 282498 (-)
XLOC_020656 CABZ01079179.1 coding upstream 81350 291091 ~ 294700 (-)
XLOC_020641 NA non-coding downstream 172528 27146 ~ 36116 (-)
XLOC_020657 NA non-coding upstream 103969 313710 ~ 315380 (-)
XLOC_020664 NA non-coding upstream 182878 392619 ~ 395900 (-)
XLOC_020672 NA non-coding upstream 450176 659917 ~ 697504 (-)
XLOC_020673 NA non-coding upstream 490472 700213 ~ 704907 (-)
XLOC_020675 NA non-coding upstream 523503 733244 ~ 735244 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00804745_00805695 ORA1 coding CI01000186 null 804644 ~ 805753 (-)