rassf10a (LOC106561459)


Basic Information

Item Value
gene id rassf10a
gene name LOC106561459
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87037294 ~ 87039516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575393.2
GGGCGTATACTTTAGTGTTTGCATAGAAATGTACCCACAGCAGTGCATACCAACCGAAAGGAAGGATGCCCGTTCCTCCTCTGCATACAGTGTTCCAAAAGGAAGTCTGATAATGTGATCCCCAGCAGAACAACTTCACAGCGTGACTCACTCAGTCTGCCACGGGAATAGTCCTACTCGAGAAAAGTACTGCGCTTATTACTTCATGATGATGACATGCTTACATGAGAATAAGGACAGCTCCAAATGAAGGTGTGTGTCACTTTTCTCTCTACAACTGAAAAGTGGAACCGAGGAGTCGAAAGGAGAGCAGAAACTGTAATCAGCAATTGGGTTAAAGGTTTTTCCTAGTATGGAGCAGGAAGAATGCAAGGTATCAGTATGGGTCTGCCGGGAGGAGAAACTGGTCTCCGGGCTGTCCAAGCGCACCACCTGCTCCGATGTTGTCAAAGTTCTACTGGAGGACCAAAACTTGAAGCAAGGTGCGTCAGCGGTGATGCTATCTGGGACCCCCCAGTCTTACTGCATAGCGGAGAAATGGAGAGGCTTTGAGAGGATTTTACCCAATAAAACCAAAATCCTGCGTCTCTGGAGTGCCTGGGGAGATGAGCAGGAAAATGTGAGGTTTGTGTTGGTGAAGAATGAGGCATCGTTACCGAACAACGGACCCAGGAGTGCCGAGGCGCGGGTTGTTCAGAGCAAAGATAGTCCGTGCGTGTTCAAGGAAGCAGCCAAGACCACAATGGCTTTCTCACAAGAAAAGCAGCGGAGGATTGTTAGAAAAGCTTTTAGAAAGTtggacaaaataaacaaaaagaaAGAGGAGACTGTTCCTAAGGATACATCCtcagtggagaaagtggaaacGTTGGTGCACTTGGTTATATCGCAAGATCACACCATCCGCCAGCAGATCAAAAGGATCAAAGAATTAGATAGGGCTATAGAGAGGTATGAGGCAAAAGTGCATTTTGACAGAATTAAGAAACATGGTATCAATTATGTGCAGGACACATACATGGTGGAGTCAAGCGCGAAGGCTGATCCAACAGAGAGCGTGCCATGTTCAGCGGAGGCTATCGCACAGTTTGAGGAGTACGCGCTCTGTTGCGAGGTGGTCCTGCGACTTCAGGAGGAGTTGACAGAACGCGAAGCTCTCATGGACATCATCACAGGTGAGATTCAGGAGGAGCTGAACCAAAGGTGGATGAAAAGACGTCAAGATGAGCTGTCGGGCAAAGATACCGATAGTATTGGGGAGTCTGTCGACATCCCCGTGTCTGCAATGGCTCCAAAGGCAGGCGTCGCTGCTCAAGAGACAACTGTGGACAGTTTATCAGAGAATGACTTGGttttagaggaggagagagtcaaAATACAGCTGGATACTAGTTTATATATTGGTCTTCGTTTGAACACAGATTTAGAGACTATTAAGGGTGATTTGGACTTAAGCCAGGAGCTGTGGGACGCAAAAGAAAAAGAACTAACGGATTTGCTCGCAAAAATGGACTCTATGGATTTAAATAACGAGAAGTTACCCGATGGTTACAAAGAACCCTCTGGTGTCACTGAGACTGAAATGTTGCCTTCCTTGGAGAAGAGCAGTGGGTGGGTGGAGCAGGCCAGAGGTCTCTCCAAGACCAGCAACACGAACGATGAGGACTCAGACACGGGGCTGAGCTCCATGCATAGCCAGGACTCTGACAATACACCTGTTTGTGAATCACTAGTGTAACTCTTTATTGAAGTGTTGAAAATATGCAATGCCAACTCAGGGACAGTGACATTCTCCACACTAAACAATATGTTTCTCCTTTTCCTCCAAAAGGCATAAGCATGGACACTTAACATCTATaaggcgtcaggtagcctagcagttaagagcatcTGACCTAAAGgttcctggttcgaatccctgacctgactaggtgaaacatatgtatatgtgcccttgagcaaggcacttgtaAGTTGCTCTGTATAACAGCGTCTGCtatatgactaaaatgtaaatagtatAAACAAGCAATATATATGTCAATTGTGCTGAAATCCTAACAAAAGTTATGGAAAATTGATATAGCTTGCTCTGCTGTTTCTGTGTGTCACAAGTATTAGAAATAGGGAAAACAACAACTGCATTGAACTGCAAAGACGCACATGACTATGGCCATTCAGCTATGAACATACAGGTTACTGTGGAAATAAAGTATTACAACA

Function

NR:

description
ras association domain-containing protein 10-like

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K09856 RASSF9_10; Ras association domain-containing protein 9/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575393.2 True 2223 mRNA 0.45 1 87037294 87039516

Neighbor

gene id symbol gene type direction distance location
LOC110498693 LOC106561455 coding downstream 69789 86938295 ~ 86967505 (-)
LOC118942938 LOC106561453 coding downstream 149955 86885163 ~ 86887339 (-)
LOC110533876 NA coding downstream 289980 86743932 ~ 86747314 (-)
zpd LOC106594968 coding downstream 318122 86715060 ~ 86719172 (-)
LOC110498636 LOC106561446 coding downstream 322298 86707476 ~ 86714996 (-)
LOC110498779 LOC106561460 coding upstream 4373 87043889 ~ 87138769 (-)
LOC110498811 NA coding upstream 105207 87144723 ~ 87150107 (-)
mical2b LOC106573205 coding upstream 130594 87170110 ~ 87259603 (-)
LOC110498882 NA coding upstream 324734 87364250 ~ 87366299 (-)
ppfibp2b LOC100380737 coding upstream 326647 87366163 ~ 87492584 (-)
G198334 LOC106561456 non-coding downstream 100113 86935403 ~ 86937181 (-)
G198231 NA non-coding downstream 164094 86871246 ~ 86873200 (-)
G198230 NA non-coding downstream 166659 86870424 ~ 86870635 (-)
G198224 NA non-coding downstream 174033 86862908 ~ 86863261 (-)
G198074 NA non-coding downstream 276362 86760709 ~ 86760932 (-)
G198543 NA non-coding upstream 71005 87110521 ~ 87110780 (-)
G198547 NA non-coding upstream 73906 87113422 ~ 87113621 (-)
G198552 NA non-coding upstream 83227 87122743 ~ 87123099 (-)
G198562 NA non-coding upstream 93503 87133019 ~ 87133236 (-)
G198676 NA non-coding upstream 182936 87222452 ~ 87223378 (-)
G198342 LOC100194703 other downstream 133338 86903036 ~ 86903956 (-)
G197554 NA other downstream 1073629 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 1193801 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 2397538 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 3055127 83977965 ~ 83982167 (-)
G198912 NA other upstream 282623 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 2567321 89606837 ~ 89609890 (-)
G202279 NA other upstream 3338041 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 4549696 91589212 ~ 91591049 (-)
G204024 NA other upstream 4747671 91787187 ~ 91788103 (-)

Expression


Co-expression Network