LOC110499346 (vps4a)


Basic Information

Item Value
gene id LOC110499346
gene name vps4a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89606837 ~ 89609890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576433.2
CACCTGGGCAACACGCGTCACAGCATCAGTGACGCAGACCTGTGTAAGCTCGCCAAAAAGACAGAAAGCTACTCCCGGGGCGATGTCAGCGTCATCGTATGAGATGCCCTGATGCAGCCTGTCAGGAAACTGCAGTCAGCCACACACTTCAAAAAGGTGCAAGGTCCATCCAGTGCCAACAGTCAATTGATGGTGGATGACCTTCTGACCCCGTGCTCGCCTGGGGACCCGGGAGCCATAGAATTGACCTGGATGGATGGGCCTAGCGACAAAATTCCAGAGCACATCATCTGCATGTCTGACATACTGCACTCACTATCCCCCACACGGCCCACAGTCAACACTGAGGACTTGTTCAAGATCAGGAAGTTCACAGAGGACTTTGGACAGGAGGGCTGAAAGGTCCTGGTCACCCGGGGAGTTCACTTCTCCttaccctgtctctcctcctctcaagcCCCATTCGTACATCCTCCTGTCAAATACAGTAGTGGCTACAGAAG
>TU228163
TTTATTATCATCTCTTCATTTTCAGCCTTGTTATATGAAGGTATACTTGTCATTTTGGGTCATCGTCAATCATGTGACTTTTAAAATGGAAAAGGTGTCTTGTTATTCTGCAGACTTTTaaaaagagaaggaaaagagagaaCCTAGCTATACTCTCCCAAAGCAAAGACTAGTGTTTGCAGATACTGCAGCAGATTTCACAGTTACTGAAATCCTACATTGCCTACTGATGAGAAGTACCATGTGTCTTAGACCATTTTAATATCATTCAATTTGATTTCAAAACCACATTTGCTCTTGAGGTATTTGTTTTCTATTTTACATACAGAACATACAATAAACTTGTTACAGTACGTACCTCAAGGCGGAAGGTAgcttagcggttaagagtgttgggccagtaactgaaaggtcgctggtgcAAATACCGAGCCaattaggtgaaaaatctgccgatgttCCCTTGAGCAGGACATGTAACACTAAtcgctcctgtaagtcgctctggataagagcacctGCTAAATGAAAACAAACTAAGGGACAGGATACACATGAAATAAGGGACAGGAAAAATATATCAATCTCAGTtggtagctcagttggtagagcatggtgctgccagggttgtgggttcgattcccacagagGACCAGTGCGAAAAAAGTgtcaaaatgtatgcactcactaatataagtcactctggataagagtgtctgctaaattactaaaatgtaaaatattgcCTTTCAGATACAACTGTGGGTTCATGATCTTTGATTCTGTAATGTACAATAGGGTTTCTGGGTCATTGTATGGGCCTCATGTTACAATACTAATGATCACACTGTAAAGAGTAAATGCATTGTTTTACATGTCTGTGCAGAAGTGTTCTATCTACAAACACGATTTCAATCCCCTAGCCTTAACACTGCCAATTTTGCTCATTTTGTTTGGGTTTTAATTTGTTTGGGTTTTAAAGCACCATTACCATTTAATACATGTTTTATCAAGCCTTTACTAATTAAACAAAAACATTTCTCTGTTGTTTTTCTACTTCTGTTTTTTGGAAAAGTGACAAAAATGTGttacaaagaacccttttggaacccttttttctaagagtgtagaacaATAGCTATTAAATGAGAAAGGTTTTATGTTGTTCaagctaaaaaaaaatatttcctaACAGACACAATAAAGTAATTATCAAGCATTCTCATCAGTGCATCATGTCACCGTCAGGTTTGAGAAGCATATCTACATCCCTCTCCTAGAACAGCCAGCTATGTCCCAGATGTTCCGGCTGCACCTGGGCAACACGCGTCACAGCATCAGTGACGCAGACCTGTGTAAGCTCGCCAAAAAGACAGAAAGCTACTCCCGGGGCGATGTCAGCGTCATCGTATGAGATGCCCTGATGCAGCCTGTCAGGAAACTGCAGTCAGCCACACACTTCAAAAAGGTGCAAGGTCCATCCAGTGCCAACAGTCAATTGATGGTGGATGACCTTCTGACCCCGTGCTCGCCTGGGGACCCGGGAGCCATAGAATTGACCTGGATGGATGGGCCTAGCGACAAAATTCCAGAGCACATCATCTGCATGTCTGACATACTGCACTCACTATCCCCCACACGGCCCACAGTCAACACTGAGGACTTGTTCAAGATCAGGAAGTTCACAGAGGACTTTGGACAGGAGGGCTGAAAGGTCCTGGTCACCCGGGGAGTTCACTTCTCCttaccctgtctctcctcctctcaagcCCCATTCGTACATCCTCCTGTCAAATACAGTAGTGGCTACAGAAGCTACAGTACTACCACACTAGAAACTTGGACTTGCTTGGCTAAACTGCATTGGCAAGAATGATGGAGCATTTTAACTTCATGCATATTCTTTCCCTGTGATCATACACAGATTCCTGTAGACTAAAACACTATGTCTTTCTTTGCCATCCTGTACTTTTTGAAGTTGTTTTTTGAAGTGACTCATTATGATGGAGTGGTGTTGAAGCGCTTTGAACAACTACGTTACGTCGTTTTCTTGTCTCGCATGTGTGTAattgcatgtgttttattcaaTGTGTAAGTCTTAATATATGTATTTTATGTGTATGATTGCTCGCTTAACTTTGCTTTTAAATTCCCTGAGTATTGACTGACCATAGCTGCACCAGGTTTCCCACTTGTCCCAGGCCCCACTAGAGCTACCCCTTCATTACAGGC

Function

symbol description
vps4a Predicted to enable ATP hydrolysis activity. Predicted to be involved in endosomal transport and vacuole organization. Predicted to act upstream of or within cell division. Predicted to be located in late endosome membrane. Predicted to be active in nucleus. Orthologous to human VPS4A (vacuolar protein sorting 4 homolog A).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 4A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576433.2 False 503 mRNA 0.54 3 89607254 89608578
TU228163 True 2232 TUCP 0.52 3 89606837 89609890

Neighbor

gene id symbol gene type direction distance location
LOC110499327 LOC106561534 coding downstream 20109 89577794 ~ 89587145 (-)
lsm14aa LOC106561533 coding downstream 51899 89538498 ~ 89555355 (-)
gpia LOC100196524 coding downstream 78450 89506624 ~ 89528804 (-)
hsd17b2 hsd17b2 coding downstream 101269 89502075 ~ 89505985 (-)
LOC110499252 papd5 coding downstream 114084 89477010 ~ 89493170 (-)
LOC110499336 LOC106561536 coding upstream 1659 89610237 ~ 89709230 (-)
LOC118944147 NA coding upstream 38884 89647462 ~ 89647514 (-)
tph2 tph2 coding upstream 131611 89740189 ~ 89748145 (-)
LOC110499378 LOC106561541 coding upstream 143165 89751743 ~ 89763372 (-)
LOC110499401 lgr5 coding upstream 184541 89793119 ~ 89820854 (-)
G201561 NA non-coding downstream 12239 89594592 ~ 89595015 (-)
G201544 NA non-coding downstream 29829 89573954 ~ 89577425 (-)
G201540 LOC106561532 non-coding downstream 48216 89558299 ~ 89559038 (-)
G201515 NA non-coding downstream 139106 89463194 ~ 89468148 (-)
G201506 NA non-coding downstream 155603 89451242 ~ 89451651 (-)
G201627 NA non-coding upstream 67453 89676031 ~ 89677465 (-)
G201667 LOC106561542 non-coding upstream 166921 89775499 ~ 89777092 (-)
G201664 LOC106561542 non-coding upstream 170524 89779102 ~ 89780286 (-)
G201673 LOC106561542 non-coding upstream 173216 89781794 ~ 89785665 (-)
G201671 LOC106561542 non-coding upstream 180308 89788886 ~ 89789501 (-)
G198912 NA other downstream 2280785 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2703298 86903036 ~ 86903956 (-)
G197554 NA other downstream 3643589 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3763761 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 4967498 84596433 ~ 84910878 (-)
G202279 NA other upstream 768979 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 1980634 91589212 ~ 91591049 (-)
G204024 NA other upstream 2178609 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2789482 92398054 ~ 92443838 (-)
G205192 NA other upstream 3353466 92962044 ~ 92962934 (-)

Expression


Co-expression Network