LOC110499401 (lgr5)


Basic Information

Item Value
gene id LOC110499401
gene name lgr5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89793119 ~ 89820854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576530.2
GGTGCCATTAATATTGCTTTACTCTAGCCAGGCAAGCCATTGCAAAGCAATCCAAGAGGGGACAAGTCCAACACTAGTTGAACAACTGCAAAGTGTTATCTGAAAAACATTTCTGTGTATGGTTATTATGTGTTTTCTTGCAATTATTATGCTCACTTTTCTGCTTGGAGTGGGCGACTGCGCGGGCACAGAACGGACCGGGGTTCTTGACACCGACACGGGCTGCCCGTCGCTTTGTAATTGTGAAGACTACGGCATGCTTCTGCGCGTGGACTGTGTGGACCTCGGTCTCGCGGAGTTGCCGTCAACATTGAGCGTATTTACTTCCTACCTTGATCTGAGTATGAACAACCTCACCCTGCTGCCCAACAGAGCCCTCTCCAACCTACACTTCCTCCAAGAGCTACGACTCGCAGGAAATTACCTAACAGACATCCCTGAAGGGGCTTTCTCTGGCCTCTTCAATCTCAAAGTACTAATGCTACAGAACAATCACCTAAAGCAGGTTCCCAGCAAGGCTCTTGAGTACCTGAGGAACCTACAGTCTCTGCGGTTAGATGCCAACGAAATTGCCAGTGTTCCTGAGAGCTCCTTTAGGGGCCTGGCGTGCTTACGCCACCTGTGGCTGGATGATAATACCCTAACGGAGGTGCCCGTCCATGCACTGGCCATCCTGCCAACCCTGCAGGCAGTGACCCTGGCCCTCAACAGCATCACCCACATCCCAGACCATGCTTTCGCCAATCTCACCAGTCTGGTGGTCCTGCATCTCCATAACAACCAAATCCAGTCGTTGGGTGATAGGTGTTTTGATGGGCTTCTCAGCCTGGAGACTCTAGATTTGAACTACAACGACCTTGCCATGTTTCCCACAGCCATCAGAGCCCTCCCTAACCTCAAAGAGCTGAGTTTCCATAGCAACAACATCAGATCTGTCCCAGAGGAAGCCTTCGTGGGAAACCCGACCCTCGACACAATATACTTCTACAACAATCCCATCCAGTTTGTAGGCAAATCAGCTTTCCAGCATTTACCAGCGCTACGGATGCTATCACTCAACGGAGCCACAGATATCACAGAGTTTCCAGACCTCACTGGCACAAACAGTTTGGAAACCCTAGCTGTCACAGGTACACACATCTCATCACTGCCAGGTACCCTCTGTGACCAGTTACCCAACCTGATACAGCTGGATCTCTCCCATAACCTGATCCAGCATCTTCCCAGCTTCAGTGGTTGCAGAAAGATCCAGAAAATTGACCTCAGCTCCAACCTGCTGTCCTCCGTCCCTATGGAAGGCTTTCAGGACCTCACACACCTCAGACTCGCTGGCAACACTGCCCTGAGACACACATTACCTGTCCAGAGACTACCTAAACTCAGGGTAGTGGTGATGCCCTACGCCTTCCAGTGCTGTGCCTTTGTACCCGGAGAAAACTCAAAGTCCCCCTACATCTGGAAAACGGAGAACATCGAGGAGGCTAGAGACCAGAATAACTTCCTGGTGGAGAGTGAGGTAGACGCCAGACCCCAGCACTCTGTCCACTGTTCCCCAGCCCAAGGTCCGTTCCAGTCATGTCAGAGTTTATTTGGGAGCTGGCTGGTGCGAGGCGCTGTTTGGATTATCGTCATCCTCTCCTTGGTGTCCAACTCCCTGGTCCTGGTGTCCATCGCCCTCTCCTCGAAGTCCCCGATCTCTCCTACCCAGCATCTACTGGGAGTCTTGGCCTGGGTCCACCTCCTCAATGGCGTCTCTAGCGCCACCCTGGCTGTACTAGACGGCATTTCATTTGACCACTATACTGATTATGGTGCGTGGTGGGAGGGTGGGCCAGGTTGCTGGATCTTTGACTTTTTGTCAGTCTTCTCCTCAGAGGCCAGTGTCTTCCTGTTGACGGCAGTTGTCTTATATCGTGGATGTACTGTCCGTGGCTCACAGTGGTCCGAGACTGAGACCAGGAGGATTCCATTGGTGTGGGGGTGTGCTCAAGGTATCTCAGCTCTGTGTTGCTTCCTGGCTGGAGCTATTGCCGCCTTACCTCTCCTCACTATGGGTGAGTATGGGgtcttctctctctgcatggcCTCTCCCTACGGACACTCTTCCCGTTTGGGCTACAGCTACACCACGGCCCTGGTACTGCTCAACTCCCTGTGTTACCTCCTGATGACAGCCATCTATACCAGACACTACTGTCACATGgacagagacacagcagagaaagagggagtcaCTGTCCAGGACTACTCTGTGACCAAACTTAAGGCCTGCCTCCTCTTCACCAACTGCCTCCTGTCTTTCCCTGTGacacttccctccctcctccagctCTCCAGCCCTAAGGTGGCTAAGGCCATCCTGCTGTTTGTGGGGCCCCTGCCCTCCTGTCTGGACCCCTTGCTCTACATGCTCCTCAGCCCTCATTTCAGGGAAGATCTCAGCAGGCTTCTCTATTGGACAACACACAGGCTAAAGAAAGGGCAGCGCCGCACTAGTTTTTTCTCAGTGAACTCCGAAGACATGGAGAAACAGTCATGTGACTCCATGCAAGCCCttgtctctctcacactgtaAGTGGAAGAGAACGCCTAACTCCTTACTGGTGCTAGTCCCCCTGCCCACTCCCATGTGTAGTACACCTCTCTCCAGACTCTAACCCAGGTGACAAGCAGTGCCACTTCAGGACCAGTCTCAGGGGGACCCACACTGAAACAGTGATGGTTATAGTGACACTTGACAGGTTGGGGAATGGATAAGTCCTCATGAGGTATAGATAACATTGAAGTGACCCTCAGATACATACACATGGAAGTGGTCTGTAACAGTGTTATTTTTAAGCAACTCTCAAGTACTTGAAATATcagcacacacacagtaactGTCACCATTCTTCGAAAGTTATATGACCTCTGTGGAATAGTTTAATGAATTATAATTGTTAATATTTTTGTTGCATCCCTTTTTTCtaggtgtaaatatatatatatttcttaagTATTTAGAAAGATTGGACCTACTAGTTGATCTATGGTTTGTGAATCATCAGTTGGCCAATAGAGGAAATGTAAAGTCGTTTACCAAAAATAATATAAAGCAAATACTAATGTAAGGACATGTTTGTTTATTGCTACAAGTTGAATGATATTACCAAATGTCACAGTAAGGTCAAATAAGTTTTAAATGTAGAGAGTTTGAAATGTGGAACGTATAAAGCAAATTATTTGGATCATGTTTGTTATTTATGGTCTGATTCCTATGTGCTTGATGGAACATATTTAACATCTGTTTTCACTCCAGTTGACAAGGTTCGCTCTTCGCCCAAACCCAACCAAATCTTACAAAGC

Function

symbol description
lgr5 Enables transmembrane signaling receptor activity. Involved in positive regulation of canonical Wnt signaling pathway. Located in nucleoplasm and trans-Golgi network membrane. Is integral component of plasma membrane.

NR:

description
leucine-rich repeat-containing G-protein coupled receptor 5

GO: NA

KEGG:

id description
K04308 LGR5, GPR49; leucine-rich repeat-containing G protein-coupled receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576530.2 True 3345 mRNA 0.49 16 89793119 89820854

Neighbor

gene id symbol gene type direction distance location
LOC110499378 LOC106561541 coding downstream 29747 89751743 ~ 89763372 (-)
tph2 tph2 coding downstream 44974 89740189 ~ 89748145 (-)
LOC110499336 LOC106561536 coding downstream 83889 89610237 ~ 89709230 (-)
LOC118944147 NA coding downstream 145605 89647462 ~ 89647514 (-)
LOC110499346 vps4a coding downstream 184541 89606837 ~ 89609890 (-)
LOC110499439 LOC106561546 coding upstream 80653 89901507 ~ 89922720 (-)
LOC110499460 LOC100136366 coding upstream 223842 90044696 ~ 90125003 (-)
LOC110502310 st7 coding upstream 376377 90197231 ~ 90298528 (-)
LOC110499482 LOC100380720 coding upstream 479692 90300546 ~ 90321779 (-)
met LOC106561553 coding upstream 517289 90338143 ~ 90427147 (-)
G201671 LOC106561542 non-coding downstream 3618 89788886 ~ 89789501 (-)
G201673 LOC106561542 non-coding downstream 7454 89781794 ~ 89785665 (-)
G201664 LOC106561542 non-coding downstream 12833 89779102 ~ 89780286 (-)
G201667 LOC106561542 non-coding downstream 16027 89775499 ~ 89777092 (-)
G201627 NA non-coding downstream 115654 89676031 ~ 89677465 (-)
G201697 NA non-coding upstream 11300 89832154 ~ 89833151 (-)
G201700 LOC100380677 non-coding upstream 52133 89872987 ~ 89874011 (-)
G201699 NA non-coding upstream 61960 89882814 ~ 89883238 (-)
G201733 NA non-coding upstream 74569 89895423 ~ 89895933 (-)
G201734 NA non-coding upstream 75113 89895967 ~ 89896274 (-)
G198912 NA other downstream 2466650 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2889163 86903036 ~ 86903956 (-)
G197554 NA other downstream 3829454 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3949626 85831239 ~ 85843493 (-)
G202279 NA other upstream 556703 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 1768358 91589212 ~ 91591049 (-)
G204024 NA other upstream 1966333 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2577206 92398054 ~ 92443838 (-)
G205192 NA other upstream 3141190 92962044 ~ 92962934 (-)

Expression


Co-expression Network