G201673 (LOC106561542)


Basic Information

Item Value
gene id G201673
gene name LOC106561542
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89781794 ~ 89785665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU228283
TGGCCAGGGCATTCTGTAGCCGGCCTGTGAACACACTGAGTTGGACCCTGTAGAGTAGAGACTCCAATAGCTGGAAGGACAGCCTCTCAGAGAGACCACTAGTCCCCACACAGTCCAGCAGGTactgcagcagacgaccacacacATAGTCCTTCCCCTCAAACAAGCTCTCCGTGGTTAGGTAACTCCACCAGACTTGGTAGTCGGGGGCGTGCTCCACTGCCATCTCACACATCTCCTGCACCTCATCCCTCTTCCCTCGACGGGAGAACAGAGACAGGTAATAGCACCAGATCTCTGGGTTGTCCCGGTTATCTTCCAGGGCCCGAGACAGAGTGTTCAACGAAGCATCCAGGCACTCAGCCGCTGACACTTCTTTCTGGCTGAGGTATTTGAAGGCCAGTTTGATCCAGAGCTGTGCGTTGCGTGAGCTCTCTAGGACACTGGTCTCCAGGTTAGATATGTCGTCAGTTTCACTAATGAAGTAGCGCTTGTCGTCAGGggtcacacacacatccagggTAGCAGACAGACTTCTCTTGGAATAACCGTCGTATTTGACTGGACCAGTGTCTCTACTCTCGTCCCAGCTGTCGTCCCCTGTGTTTGGGCTAGCCTGGTAAGCGGGTTGAGGCCTCCACCTCCTGAGATCCTTACACGTGGTGAAGGGAGGGACATGTCTTTTGCTTTCGTTCACTTTGCTGACGAGTAGAACAGCCTTCTGGTCCATCCCCATGCGATCATTGTTAGCCACAAACAGCTGTTTTATATACTTCTCTGTGGCAACATTGATGACATCACTAGTACTGCTCTCAGAGCAGCCAATCAGGGCCAGGTTGTACGACAGGATATCCTGGAACAGCTGGTTTCCAC

Function

NR:

description
zinc finger C3H1 domain-containing protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228283 True 873 lncRNA 0.53 6 89781794 89785665

Neighbor

gene id symbol gene type direction distance location
LOC110499378 LOC106561541 coding downstream 18422 89751743 ~ 89763372 (-)
tph2 tph2 coding downstream 33649 89740189 ~ 89748145 (-)
LOC110499336 LOC106561536 coding downstream 72564 89610237 ~ 89709230 (-)
LOC118944147 NA coding downstream 134280 89647462 ~ 89647514 (-)
LOC110499346 vps4a coding downstream 173216 89606837 ~ 89609890 (-)
LOC110499401 lgr5 coding upstream 7454 89793119 ~ 89820854 (-)
LOC110499439 LOC106561546 coding upstream 115842 89901507 ~ 89922720 (-)
LOC110499460 LOC100136366 coding upstream 259031 90044696 ~ 90125003 (-)
LOC110502310 st7 coding upstream 411566 90197231 ~ 90298528 (-)
LOC110499482 LOC100380720 coding upstream 514881 90300546 ~ 90321779 (-)
G201664 LOC106561542 non-coding downstream 1508 89779102 ~ 89780286 (-)
G201667 LOC106561542 non-coding downstream 4702 89775499 ~ 89777092 (-)
G201627 NA non-coding downstream 104329 89676031 ~ 89677465 (-)
G201561 NA non-coding downstream 186779 89594592 ~ 89595015 (-)
G201544 NA non-coding downstream 204369 89573954 ~ 89577425 (-)
G201671 LOC106561542 non-coding upstream 3221 89788886 ~ 89789501 (-)
G201697 NA non-coding upstream 46489 89832154 ~ 89833151 (-)
G201700 LOC100380677 non-coding upstream 87322 89872987 ~ 89874011 (-)
G201699 NA non-coding upstream 97149 89882814 ~ 89883238 (-)
G201733 NA non-coding upstream 109758 89895423 ~ 89895933 (-)
G198912 NA other downstream 2455325 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2877838 86903036 ~ 86903956 (-)
G197554 NA other downstream 3818129 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3938301 85831239 ~ 85843493 (-)
G202279 NA other upstream 591892 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 1803547 91589212 ~ 91591049 (-)
G204024 NA other upstream 2001522 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2612395 92398054 ~ 92443838 (-)
G205192 NA other upstream 3176379 92962044 ~ 92962934 (-)

Expression


Co-expression Network