spi1a (LOC106592577)


Basic Information

Item Value
gene id spi1a
gene name LOC106592577
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100114829 ~ 100126246 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960894.1
ATTTCATGATATATAATTTACCTAACATCTCGCAAATCTCCGTTTTGGACGAGACTGATTTTATAGGggaaattatcctatttacacttcgTAGTCATTTTGACACTGGAATGAATGTTTCTGCCACATAGACATTATTCAAAATGAGAAGTTGTTTTTATGGGCAGTCTCTCTATAAAGCCTGCAGAGCATGGCTGGGAGTACCACTCTGACAGGGGCATGCATCAGAGTGACATGTTGGAAATCTCCTCACAAGGGAAtcatctgacagagctccagagtgtcCATTCCCAACAGCTCCTCCACCCTTATCGCTACCCCGATACCGACACCCTCCACCTGCCACTAGCAGACCCAGGACTgggacccctaaccctaacctcacagATGCCGTACTACAACCACACAGTGTATTACCAGCAACAGGCCCCTGTGTCCCCTAGTTACTACTGCTCAGAGGAGGAGGAACCTGTGGGCCACAGTCCCCCACTGGAGGTATCTGAGGGTGAAGAAGAGGACTATGGAGACCATGTCCCTTTTGGGGGAGACTCCGGTAACAAGAGGAAGATCCGGCTGTACCAGTTCCTCCTGGACATGCTGAAGAACGGAGACATGAAGGACAGTATGTGGtgggtggacagagagaaaggaatcTTCCAGTTCTCCTCTAAAAACAAGGAGACTCTGGCCAATCGCTGGGGCACGCAGAAAGGGAACAGGAAGAGGATGACATATCAGAAGATGGCCAGGGCCCTGCGGAACTACGGCAAGACTGGAGAAATCAGAAAGGTCAAGAAGAAACTGACCTACCAGTTCAGTCCGGAGGTACTGAGGAAAGTCTCGACTACAGAGAGGAGGCACTACCCTCACTAGGAGTACCAGAGATTGTTAATGTAATGCCACTGTATTACAGGCTTTGGGAGTAGGCCTAACCTCACTGCTAATGTCTTGAAAATAGGACAATAATGACTGTCTACTGTGATTGTATTTCATTACATTTAAAATGATACCCCAGAAACAATCAGGTAACATTAAACATGTCGATGTTTAGATTTTTGTTATTGGTGTTTGCATAttccatgtttatttatttacttaacaAGTCGTCGTGTGTCACGTGTTACATTATCTTAACTCTTGACTCTATCTTTGTGTCTGtgatgggaagaaaaaaaaataaagtatATTTTTTACATA
>XM_036960892.1
aaCTTTCAGGAACTCAGGAACTGAGTGACAATCAGACCGAAGATGAAAAAAAGTGAAAGTATATTATGGTCTTGGTTTAATACTCTCTGCGTAGTTTTGGTCTGATAGTGGTCAACTGTAATATTCGACTAAACGACTTCCATCAGAAATTCAATCAAAATTAATGGGAATTAAGTCAAAAGGATATTTCTCCATTTTTTTGGGATTATAACTGTGTTTTTGAAAGTCATCATGTCCTTTGCATCTGAAGAAATAATCCCATATGATCCTGAGATTTATCGATCACCAGCGGAGTTATACTCATATCTCACCAATGTCGGAGAACTTCACGATGAGCATGGCTGGGAGTACCACTCTGACAGGGGCATGCATCAGAGTGACATGTTGGAAATCTCCTCACAAGGGAAtcatctgacagagctccagagtgtcCATTCCCAACAGCTCCTCCACCCTTATCGCTACCCCGATACCGACACCCTCCACCTGCCACTAGCAGACCCAGGACTgggacccctaaccctaacctcacagATGCCGTACTACAACCACACAGTGTATTACCAGCAACAGGCCCCTGTGTCCCCTAGTTACTACTGCTCAGAGGAGGAGGAACCTGTGGGCCACAGTCCCCCACTGGAGGTATCTGAGGGTGAAGAAGAGGACTATGGAGACCATGTCCCTTTTGGGGGAGACTCCGGTAACAAGAGGAAGATCCGGCTGTACCAGTTCCTCCTGGACATGCTGAAGAACGGAGACATGAAGGACAGTATGTGGtgggtggacagagagaaaggaatcTTCCAGTTCTCCTCTAAAAACAAGGAGACTCTGGCCAATCGCTGGGGCACGCAGAAAGGGAACAGGAAGAGGATGACATATCAGAAGATGGCCAGGGCCCTGCGGAACTACGGCAAGACTGGAGAAATCAGAAAGGTCAAGAAGAAACTGACCTACCAGTTCAGTCCGGAGGTACTGAGGAAAGTCTCGACTACAGAGAGGAGGCACTACCCTCACTAGGAGTACCAGAGATTGTTAATGTAATGCCACTGTATTACAGGCTTTGGGAGTAGGCCTAACCTCACTGCTAATGTCTTGAAAATAGGACAATAATGACTGTCTACTGTGATTGTATTTCATTACATTTAAAATGATACCCCAGAAACAATCAGGTAACATTAAACATGTCGATGTTTAGATTTTTGTTATTGGTGTTTGCATAttccatgtttatttatttacttaacaAGTCGTCGTGTGTCACGTGTTACATTATCTTAACTCTTGACTCTATCTTTGTGTCTGtgatgggaagaaaaaaaaataaagtatATTTTTTACATA

Function

NR:

description
transcription factor PU.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960894.1 False 1197 mRNA 0.45 4 100114829 100124477
XM_036960892.1 True 1344 mRNA 0.44 5 100114829 100126246

Neighbor

gene id symbol gene type direction distance location
LOC110500962 LOC106561782 coding downstream 884 100103552 ~ 100113945 (-)
LOC110502573 LOC106561753 coding downstream 359939 99726157 ~ 99754890 (-)
LOC110502568 LOC106561766 coding downstream 389502 99697219 ~ 99725327 (-)
LOC118936886 NA coding downstream 495687 99615676 ~ 99619142 (-)
LOC110500900 LOC106561773 coding downstream 499498 99600785 ~ 99615331 (-)
LOC110500995 LOC106561801 coding upstream 33687 100155072 ~ 100161971 (-)
ano3 ano3 coding upstream 93785 100220031 ~ 100340996 (-)
LOC118944188 NA coding upstream 226000 100352246 ~ 100352436 (-)
LOC110501236 LOC106561804 coding upstream 246119 100372365 ~ 100438050 (-)
LOC118936890 NA coding upstream 317553 100443799 ~ 100457727 (-)
G211636 NA non-coding downstream 23717 100081357 ~ 100091112 (-)
G211634 NA non-coding downstream 34142 100079252 ~ 100080687 (-)
G211633 NA non-coding downstream 37057 100076683 ~ 100077772 (-)
G211594 NA non-coding downstream 93311 100020993 ~ 100021518 (-)
G211470 NA non-coding downstream 116359 99998105 ~ 99998470 (-)
G211647 NA non-coding upstream 486 100126732 ~ 100127612 (-)
G211693 NA non-coding upstream 107330 100233576 ~ 100233986 (-)
G211694 NA non-coding upstream 109572 100235818 ~ 100247348 (-)
G211701 NA non-coding upstream 165837 100292083 ~ 100293864 (-)
G211703 NA non-coding upstream 171204 100297450 ~ 100298473 (-)
G211630 LOC106584747 other downstream 41032 100073247 ~ 100073797 (-)
G211447 myo5c other downstream 151355 99959557 ~ 99963474 (-)
G211402 NA other downstream 256974 99856313 ~ 99857855 (-)
G211904 LOC100136012 other upstream 328903 100455149 ~ 100455433 (-)
LOC110502607 ano5 other upstream 343020 100461545 ~ 100543552 (-)
pkp3a pkp3 other upstream 570460 100662972 ~ 100716213 (-)
LOC110502631 LOC106592148 other upstream 975688 100976119 ~ 101191014 (-)

Expression


Co-expression Network