LOC110501236 (LOC106561804)


Basic Information

Item Value
gene id LOC110501236
gene name LOC106561804
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100372365 ~ 100438050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961156.1
GTTTCTCCGATGTCAGATTGGAGTCAggagtgcagggagagagaggaagaacgcAGCGTAACATTCCCACCCAGTCCAGCATGACTGATCTTAAACTTCCCTTCTATCGGCGGTGCAGCAACGACTTTGGTGCAGGTCTTTGAGAGACAGATATATTTAGCATTGCCCGATCTTACCCACTGTTTTCAGCGACAGACCGTAGGGTAGGCTAGAAAAGCATGAATATAGAACGCACTGAGGAGCAAAGAGACGGCACGAGAGGACGGTAACGGTCCGGATAGAAGAGTTGCTTTGAAGAGGgTGACGGGAGAGACCCACCATGTGCAGCTCTCTGAGTCCCAAGCAGCCGATTGGCCCAGGCCTGACGGATATGCAGCAGTATAGCCAATGGCTGGCCAGCCGCCATGAAGCCAGCCTTTTGCCAATGAAGGAAGACCTAGCCCTATGGCTAACCAGCATGCTGGGTCTGGAGATCACAGCAGAGAGCTTCATGGAGCGTTTGGACAATGGCTTCCTGCTGTGCCAGCTGGCTGAGACGCTACAGGAGAAGTTCAAGCAGAACCAGACTCAGAACCGTGGAGAACTGCCTCTTGGCAATGGAAAGGCCATCCCATGCCGGAGGATCCCGTGTCGTGCCAGCGCTCCCTCCGGGTCCTTCTTCGCCAGGGACAACACAGCTAACTTCCTGACCTGGTGTCGTCAGGTGGGGGTGGGAGAGACCTGCCTGTTTGAGTCTGAGGGACTGGTTCTTCACAAACAGCCACGGGAAGTATGCCTCTGTCTCCTACAGCTGGGAAGGATAGCGTCTCGGTACAACGTGGAGCCTCCGGGGCTTATCAagctggagaaggagatagaACAGGAGGAGAAAGTATCGCTaccctcacctgtctctccctcccaatctctctctccatccccttctccaaaccccccatccccctctccaacctctccattcccctctccaaCCAAGTGCTTGTCGTCTTGCAAGAAGAGCACAGGGAAGCTGCTGGATGAGGCTGTGAAGCATATCTTTGAGGAGCCTCCCTGCAAGTGTCCCAATAAATTCTGTGTGGAGAGACAGGCTCAGGGCCGCTATCGCGTCGGGGAGAAGATGCTCTTCATCCGGATGTTACACAACAAGCATGTGATGGTGCGTGTGGGAGGAGGCTGGGAGACTTTTGAGAGCTACCTGCTGAAACACGACCCATGTCGGATGCTCCAGATCTCCAGAGTGGAGGGGAAGGCCTTTCCCATGTCCCCCAAGTCCCCCAACACCAAGGACCTCACCCCAGACAGCTACTTGGTGGTGGCCGCACACTACCGCAGCAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGTACACTACCGCAGCAAAAAGTCAACTGACGCTTCAACCAAGGGGATCAGTTTGAGCAATGCGaggatggtggtggtggcctACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAAAAGTAAAAATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAAAAGTAAAAATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAAAAGTAAAAATGGCCACCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAAAAGTAAAAATGGCCGCCTACTACCACAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGTTGGCCGCCTACTACCGCAACAAGAAGTAAAGTTGGCCGCCTACTACCGCAACAAGAAGTAAAAATGGCCGCCTGCTACCACAACAAGAAGTAAAGTTGGCCGCCTACTACCGCAACAAGAAGTAAAAATGGCCGCCTGCTACCGCAACAAGAAGTAAAGATGGCCGCCTGCTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGACATTCATGAGGACCTGAGGAAATGACCTCTTGCCTTTCCCAACTAGCAAAACTGATTGAAATGACAGTGACACAGAGGGTAAAGCCAGCTGACACAGTGTCATTCCAACCAGATTCCAACCAGTTGCTGTCTTCTAGTTGATGTAAGCCACAGCCGGCCCACCTGAGCTACAGAACAGACAGTGGCCAGCAGGTATATATCTCCTGTCCTAGCAGTCACGGCGAACTAGCGTCAACGTGACAGTTTGATTTGGATTTACAGCCTTTGAGAATTATCTATGCAATCATTTTGACAATCATTTTGACAATCATTTTTAGCCGGGGATTGAGGCTGGTATATTTGGTACTAAAAGCATGTTTTCTAATGTTACCTTGTGTGTATTTTGTTTGACTtttgtcattcattcatttaATAGTGTGAAAGTATAGTATGACTTCTGTAATAATGGATATATTCTGAATAATGATTGGATACTGGTCAAGCTAAATCTGGACATGTTCCACCAATCATGTTCCTCCTACGGTTCCACCAATCATGTTCCTCCTACGGTTCCACCAATCATGGGCTTTCTCCTTTCCTTGTTTTCTAAATATGCAGCTACACCACACAAGGGAAGATAATCATGGCTAAAAcaatatgttttttaaatgtaatcccACCATCGGTCACAGTACAGGCTTACTGGTTACCACGCCCAGGGACCTGTCTCTGGCTTGAGCTTTTTTGCTTTAAAGACCAAAGGGTTCCACCATTCATTCTAATGGAAGTCAACATTTAAAATATGTTTGAAATAGTGCTACTTTATTATGTTAAAAGTCCTGACTAATATGAATAGCTTATACGTAGGATGTGTTTGTTATGattatgtatctctgtaatgtctaTTAATTTCTCCAATGTGCTATTATGTGTGATTTCTCTTTTTTTCCATGTGCTAGTTTGTCTCTCCTGTTTTTCGAAGTTAAAAGCTTTTGATAATTTGTTAATTTTAGGAACGCTATTAATTAACATCATTATTTTTGAGAAGATTATTTCTGAGGATTAAAGAGACAATCAAAT
>XM_036961164.1
GTTTCTCCGATGTCAGATTGGAGTCAggagtgcagggagagagaggaagaacgcAGCGTAACATTCCCACCCAGTCCAGCATGACTGATCTTAAACTTCCCTTCTATCGGCGGTGCAGCAACGACTTTGGTGCAGGTCTTTGAGAGACAGATATATTTAGCATTGCCCGATCTTACCCACTGTTTTCAGCGACAGACCGTAGGGTAGGCTAGAAAAGCATGAATATAGAACGCACTGAGGAGCAAAGAGACGGCACGAGAGGACGGTAACGGTCCGGATAGAAGAGTTGCTTTGAAGAGGgTGACGGGAGAGACCCACCATGTGCAGCTCTCTGAGTCCCAAGCAGCCGATTGGCCCAGGCCTGACGGATATGCAGCAGTATAGCCAATGGCTGGCCAGCCGCCATGAAGCCAGCCTTTTGCCAATGAAGGAAGACCTAGCCCTATGGCTAACCAGCATGCTGGGTCTGGAGATCACAGCAGAGAGCTTCATGGAGCGTTTGGACAATGGCTTCCTGCTGTGCCAGCTGGCTGAGACGCTACAGGAGAAGTTCAAGCAGAACCAGACTCAGAACCGTGGAGAACTGCCTCTTGGCAATGGAAAGGCCATCCCATGCCGGAGGATCCCGTGTCGTGCCAGCGCTCCCTCCGGGTCCTTCTTCGCCAGGGACAACACAGCTAACTTCCTGACCTGGTGTCGTCAGGTGGGGGTGGGAGAGACCTGCCTGTTTGAGTCTGAGGGACTGGTTCTTCACAAACAGCCACGGGAAGTATGCCTCTGTCTCCTACAGCTGGGAAGGATAGCGTCTCGGTACAACGTGGAGCCTCCGGGGCTTATCAagctggagaaggagatagaACAGGAGGAGAAAGTATCGCTaccctcacctgtctctccctcccaatctctctctccatccccttctccaaaccccccatccccctctccaacctctccattcccctctccaaCCAAGTGCTTGTCGTCTTGCAAGAAGAGCACAGGGAAGCTGCTGGATGAGGCTGTGAAGCATATCTTTGAGGAGCCTCCCTGCAAGTGTCCCAATAAATTCTGTGTGGAGAGACAGGCTCAGGGCCGCTATCGCGTCGGGGAGAAGATGCTCTTCATCCGGATGTTACACAACAAGCATGTGATGGTGCGTGTGGGAGGAGGCTGGGAGACTTTTGAGAGCTACCTGCTGAAACACGACCCATGTCGGATGCTCCAGATCTCCAGAGTGGAGGGGAAGGCCTTTCCCATGTCCCCCAAGTCCCCCAACACCAAGGACCTCACCCCAGACAGCTACTTGGTGGTGGCCGCACACTACCGCAGCAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGTACACTACCGCAGCAAAAAGTCAACTGACGCTTCAACCAAGGGGATCAGTTTGAGCAATGCGaggatggtggtggtggcctACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAAAAGTAAAAATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAAAAGTAAAAATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAAAAGTAAAAATGGCCACCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAAAAGTAAAAATGGCCGCCTACTACCACAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGTTGGCCGCCTACTACCGCAACAAGAAGTAAAGTTGGCCGCCTACTACCGCAACAAGAAGTAAAAATGGCCGCCTGCTACCACAACAAGAAGTAAAGTTGGCCGCCTACTACCGCAACAAGAAGTAAAAATGGCCGCCTGCTACCGCAACAAGAAGTAAAGATGGCCGCCTGCTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGACATTCATGAGGACCTGAGGAAATGACCTCTTGCCTTTCCCAACTAGCAAAACTGATTGAAATGACAGTGACACAGAGGGTAAAGCCAGCTGACACAGTGTCATTCCAACCAGATTCCAACCAGTTGCTGTCTTCTAGTTGATGTAAGCCACAGCCGGCCCACCTGAGCTACAGAACAGACAGTGGCCAGCAGGTATATATCTCCTGTCCTAGCAGTCACGGCGAACTAGCGTCAACGTGACAGTTTGATTTGGATTTACAGCCTTTGAGAATTATCTATGCAATCATTTTGACAATCATTTTGACAATCATTTTTAGCCGGGGATTGAGGCTGGTATATTTGGTACTAAAAGCATGTTTTCTAATGTTACCTTGTGTGTATTTTGTTTGACTtttgtcattcattcatttaATAGTGTGAAAGTATAGTATGACTTCTGTAATAATGGATATATTCTGAATAATGATTGGATACTGGTCAAGCTAAATCTGGACATGTTCCACCAATCATGTTCCTCCTACGGTTCCACCAATCATGTTCCTCCTACGGTTCCACCAATCATGGGCTTTCTCCTTTCCTTGTTTTCTAAATATGCAGCTACACCACACAAGGGAAGATAATCATGGCTAAAAcaatatgttttttaaatgtaatcccACCATCGGTCACAGTACAGGCTTACTGGTTACCACGCCCAGGGACCTGTCTCTGGCTTGAGCTTTTTTGCTTTAAAGACCAAAGGGTTCCACCATTCATTCTAATGGAAGTCAACATTTAAAATATGTTTGAAATAGTGCTACTTTATTATGTTAAAAGTCCTGACTAATATGAATAGCTTATACGTAGGATGTGTTTGTTATGattatgtatctctgtaatgtctaTTAATTTCTCCAATGTGCTATTATGTGTGATTTCTCTTTTTTTCCATGTGCTAGTTTGTCTCTCCTGTTTTTCGAAGTTAAAAGCTTTTGATAATTTGTTAATTTTAGGAACGCTATTAATTAACATCATTATTTTTGAGAAGATTATTTCTGAGGATTAAAGAGACAATCAAAT
>XR_005039301.1
GTTTCTCCGATGTCAGATTGGAGTCAggagtgcagggagagagaggaagaacgcAGCGTAACATTCCCACCCAGTCCAGCATGACTGATCTTAAACTTCCCTTCTATCGGCGGTGCAGCAACGACTTTGGTGCAGGTCTTTGAGAGACAGATATATTTAGCATTGCCCGATCTTACCCACTGTTTTCAGCGACAGACCGTAGGGTAGGCTAGAAAAGCATGAATATAGAACGCACTGAGGAGCAAAGAGACGGCACGAGAGGACGGTAACGGTCCGGATAGAAGAGTTGCTTTGAAGAGGgTGACGGGAGAGACCCACCATGTGCAGCTCTCTGAGTCCCAAGCAGCCGATTGGCCCAGGCCTGACGGATATGCAGCAGTATAGCCAATGGCTGGCCAGCCGCCATGAAGCCAGCCTTTTGCCAATGAAGGAAGACCTAGCCCTATGGCTAACCAGCATGCTGGGTCTGGAGATCACAGCAGAGAGCTTCATGGAGCGTTTGGACAATGGCTTCCTGCTGTGCCAGCTGGCTGAGACGCTACAGGAGAAGTTCAAGCAGAACCAGACTCAGAACCGTGGAGAACTGCCTCTTGGCAATGGAAAGGCCATCCCATGCCGGAGGATCCCGTGTCGTGCCAGCGCTCCCTCCGGGTCCTTCTTCGCCAGGGACAACACAGCTAACTTCCTGACCTGGTGTCGTCAGGTGGGGGTGGGAGAGACCTGCCTGTTTGAGTCTGAGGGACTGGTTCTTCACAAACAGCCACGGGAAGTATGCCTCTGTCTCCTACAGCTGGGAAGGATAGCGTCTCGGTACAACGTGGAGCCTCCGGGGCTTATCAagctggagaaggagatagaACAGGAGGAGAAAGTATCGCTaccctcacctgtctctccctcccaatctctctctccatccccttctccaaaccccccatccccctctccaacctctccattcccctctccaaCCAAGTGCTTGTCGTCTTGCAAGAAGAGCACAGGGAAGCTGCTGGATGAGGCTGTGAAGCATATCTTTGAGGAGCCTCCCTGCAAGTGTCCCAATAAATTCTGTGTGGAGAGACAGGCTCAGGGCCGCTATCGCGTCGGGGAGAAGATGCTCTTCATCCGGATGTTACACAACAAGCATGTGATGGTGCGTGTGGGAGGAGGCTGGGAGACTTTTGAGAGCTACCTGCTGAAACACGACCCATGTCGGATGCTCCAGATCTCCAGAGTGGAGGGGAAGGCCTTTCCCATGTCCCCCAAGTCCCCCAACACCAAGGACCTCACCCCAGACAGCTACTTGGTGGTGGCCGCACACTACCGCAGCAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAAAAGTAAAAATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAAAAGTAAAAATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAGAAGTAAAGATGGCCACCTACTACCGCAACAAAAAGTAAAAATGGCCACCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAAAAGTAAAAATGGCCGCCTACTACCACAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGTTGGCCGCCTACTACCGCAACAAGAAGTAAAGTTGGCCGCCTACTACCGCAACAAGAAGTAAAAATGGCCGCCTGCTACCACAACAAGAAGTAAAGTTGGCCGCCTACTACCGCAACAAGAAGTAAAAATGGCCGCCTGCTACCGCAACAAGAAGTAAAGATGGCCGCCTGCTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGATGGCCGCCTACTACCGCAACAAGAAGTAAAGACATTCATGAGGACCTGAGGAAATGACCTCTTGCCTTTCCCAACTAGCAAAACTGATTGAAATGACAGTGACACAGAGGGTAAAGCCAGCTGACACAGTGTCATTCCAACCAGATTCCAACCAGTTGCTGTCTTCTAGTTGATGTAAGCCACAGCCGGCCCACCTGAGCTACAGAACAGACAGTGGCCAGCAGGTATATATCTCCTGTCCTAGCAGTCACGGCGAACTAGCGTCAACGTGACAGTTTGATTTGGATTTACAGCCTTTGAGAATTATCTATGCAATCATTTTGACAATCATTTTGACAATCATTTTTAGCCGGGGATTGAGGCTGGTATATTTGGTACTAAAAGCATGTTTTCTAATGTTACCTTGTGTGTATTTTGTTTGACTtttgtcattcattcatttaATAGTGTGAAAGTATAGTATGACTTCTGTAATAATGGATATATTCTGAATAATGATTGGATACTGGTCAAGCTAAATCTGGACATGTTCCACCAATCATGTTCCTCCTACGGTTCCACCAATCATGTTCCTCCTACGGTTCCACCAATCATGGGCTTTCTCCTTTCCTTGTTTTCTAAATATGCAGCTACACCACACAAGGGAAGATAATCATGGCTAAAAcaatatgttttttaaatgtaatcccACCATCGGTCACAGTACAGGCTTACTGGTTACCACGCCCAGGGACCTGTCTCTGGCTTGAGCTTTTTTGCTTTAAAGACCAAAGGGTTCCACCATTCATTCTAATGGAAGTCAACATTTAAAATATGTTTGAAATAGTGCTACTTTATTATGTTAAAAGTCCTGACTAATATGAATAGCTTATACGTAGGATGTGTTTGTTATGattatgtatctctgtaatgtctaTTAATTTCTCCAATGTGCTATTATGTGTGATTTCTCTTTTTTTCCATGTGCTAGTTTGTCTCTCCTGTTTTTCGAAGTTAAAAGCTTTTGATAATTTGTTAATTTTAGGAACGCTATTAATTAACATCATTATTTTTGAGAAGATTATTTCTGAGGATTAAAGAGACAATCAAAT

Function

NR:

description
growth arrest-specific protein 2-like

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process

KEGG:

id description
K24627 GAS2, GAS2L; growth arrest-specific protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961156.1 False 3250 mRNA 0.48 8 100372365 100438050
XM_036961164.1 False 3218 mRNA 0.48 9 100372365 100438050
XR_005039301.1 True 3108 mRNA 0.48 9 100372365 100438050

Neighbor

gene id symbol gene type direction distance location
LOC118944188 NA coding downstream 19929 100352246 ~ 100352436 (-)
ano3 ano3 coding downstream 31369 100220031 ~ 100340996 (-)
LOC110500995 LOC106561801 coding downstream 210394 100155072 ~ 100161971 (-)
spi1a LOC106592577 coding downstream 246119 100114829 ~ 100126246 (-)
LOC110500962 LOC106561782 coding downstream 258420 100103552 ~ 100113945 (-)
LOC118936890 NA coding upstream 5749 100443799 ~ 100457727 (-)
LOC110502607 ano5 coding upstream 23495 100461545 ~ 100543552 (-)
pkp3a pkp3 coding upstream 224922 100662972 ~ 100716213 (-)
LOC110501188 LOC106561812 coding upstream 291140 100729190 ~ 100782512 (-)
sergef sergef coding upstream 425007 100863057 ~ 100889244 (-)
G211750 NA non-coding downstream 20440 100350480 ~ 100351925 (-)
G211724 NA non-coding downstream 33311 100338816 ~ 100339054 (-)
G211722 NA non-coding downstream 36035 100334235 ~ 100336330 (-)
G211721 NA non-coding downstream 38481 100333505 ~ 100333884 (-)
G211718 NA non-coding downstream 44036 100328044 ~ 100328329 (-)
G211903 NA non-coding upstream 16573 100454623 ~ 100454842 (-)
G211911 NA non-coding upstream 39048 100477098 ~ 100478671 (-)
G211912 NA non-coding upstream 43715 100481765 ~ 100482089 (-)
G211914 NA non-coding upstream 51095 100489145 ~ 100489402 (-)
G211921 NA non-coding upstream 56936 100494986 ~ 100541201 (-)
G211633 NA other downstream 294593 100076683 ~ 100077772 (-)
G211630 LOC106584747 other downstream 298568 100073247 ~ 100073797 (-)
G211447 myo5c other downstream 408891 99959557 ~ 99963474 (-)
G211402 NA other downstream 514510 99856313 ~ 99857855 (-)
G211904 LOC100136012 other upstream 17099 100455149 ~ 100455433 (-)
LOC110502631 LOC106592148 other upstream 663884 100976119 ~ 101191014 (-)
G212829 LOC106613263 other upstream 1274188 101712238 ~ 101712847 (-)

Expression


Co-expression Network