LOC110501379 (LOC106561844)


Basic Information

Item Value
gene id LOC110501379
gene name LOC106561844
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 103226832 ~ 103229829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578910.2
GAGCCAACTGGCCCTCATGCCTTTTTCCTAGGTGGAAGAATGTATGGCATTCTAGCCTAGACTCGTGGCTATCGGACTGAGTTTTATTGAAGAGTAGCAAAGGATAGAAGGAGACAGTGAAATCATCATGCAATCAGAGGTATACAGTCATAAAAGAGAGATGGTGGCAAAACCTCGACCAAGAGTTTTCATATGGGTCACCGTAGCGATGGTGTGGTGTCAAGATCTTTTAGAAGATGTGTCTGGTGCCGTACATGGCGGTCTTCCTTCCCAGGGCTTGGGCCAATCCATCACCGATTCAAACCTGATGTTTGAGTTCTTGTTGGGTGGAGTAGAGATCGACAAAGACAACAACATCGCTCTGCTGGACCTGGAGATGGCATCTATGAGGCAGGGACGAGCTTTCCTGGCTCACATCAACGACAACATCCCCAAGACGCTCTCTTCTATGGAGCAGATGGTGAAGGACCTGGAGGACAAGAGAGGGCCTCTCCCTCTCGCCCAACCCCGCTTTGAGAGCCTCATCCTGGGCATGGTCTACTCTGCTCACCAGGCCAAgctccaggagagagagaaggaccaggagaaatggggagaggtGCTGATACGTCTGGCTAATATTACAGTCAACGAGCTGCGTAGACTGGAGACCATCACAATATTCACTTAGATTAAGATACAGACTGTTCATTAGCCTGGTCCCAAGCTTGTAATTATCTTTTTTAATACAGTATACAaaaggatatatacagtagcagtcaaaagtttagacacacctactgatt

Function

NR:

description
protein FAM180A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578910.2 True 785 mRNA 0.48 3 103226832 103229829

Neighbor

gene id symbol gene type direction distance location
kif23 kif23 coding downstream 3596 103182386 ~ 103223236 (-)
LOC110501401 LOC106561857 coding downstream 85095 103134340 ~ 103141737 (-)
LOC110501464 snapc5 coding downstream 429037 102788284 ~ 102797795 (-)
LOC118944161 NA coding downstream 449454 102777280 ~ 102777378 (-)
LOC118944155 NA coding downstream 449925 102776839 ~ 102776907 (-)
ighmbp2 ighmbp2 coding upstream 53364 103283193 ~ 103317354 (-)
gatd1 pddc1 coding upstream 100680 103330509 ~ 103334761 (-)
tmem258 NA coding upstream 113002 103342831 ~ 103345931 (-)
myrf LOC106561839 coding upstream 121117 103350946 ~ 103439912 (-)
ppp1r32 ppp1r32 coding upstream 467705 103697534 ~ 103722719 (-)
G214148 NA non-coding downstream 40505 103174478 ~ 103186327 (-)
G214146 NA non-coding downstream 56481 103169325 ~ 103170351 (-)
G214140 NA non-coding downstream 62782 103163769 ~ 103164050 (-)
G214136 NA non-coding downstream 70615 103155575 ~ 103156217 (-)
G214124 NA non-coding downstream 107157 103119165 ~ 103119675 (-)
G214182 NA non-coding upstream 24159 103253988 ~ 103254220 (-)
G214196 NA non-coding upstream 41678 103271507 ~ 103271793 (-)
G214199 NA non-coding upstream 52455 103282284 ~ 103282740 (-)
G214209 NA non-coding upstream 116334 103346163 ~ 103350430 (-)
G214219 NA non-coding upstream 151229 103381058 ~ 103382607 (-)
G214137 NA other downstream 68978 103156510 ~ 103157854 (-)
G214126 NA other downstream 103863 103121649 ~ 103122969 (-)
G214041 NA other downstream 363061 102863407 ~ 102863771 (-)
G214038 NA other downstream 379305 102844021 ~ 102847527 (-)
G214030 NA other downstream 407003 102819368 ~ 102819829 (-)
G214207 NA other upstream 84459 103314288 ~ 103314933 (-)
G214461 NA other upstream 369150 103598979 ~ 103599687 (-)

Expression


Co-expression Network