ighmbp2 (ighmbp2)


Basic Information

Item Value
gene id ighmbp2
gene name ighmbp2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 103283193 ~ 103317354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578827.2
GCTCATGGAAGTCGCACAATGAAATAAACACATATTACAGCATACAACATTTACAGGGGAAAAAAAGGACAgagaataatattttttttttgttggtagcAAATGAAATAAACTGTAGAAGAATTCAGAAACGTTCATCCTAACCCACGCTCCAGCTCAGCAGGTGGCGATATACCTTAGACGTGTTTGCAACGAAATGACGCATTAATCCACCGAAGAGGAAAATAATGAATTTGCTCAACTCGAACTGATTCAACAAGCAGTGAGAAATGGAGGTGGAATGCTTTGTGTCCAAGACCCTAGAGCTCcttcaggaggagagagaagcagagatcgAGGAGACCAAGCTATGGCAGGAGAATGTCTCTCTGAAAGATCTCCAGAGTAAAGGCGTTTGTCTCCTGAAGCTGCAGATAGGAAGCCAGTCAACTGGCCTTTATGGACGATCACTCCTCCTTCTGGAACCCAGAAAGCACATGGGTGTCTCTGTGCTGCCTAGCAACAACTTTGGTCCCGGAGACATAGTGGGTCTGTATGACCTGGATGGCTGTAAGCCGTCCTCCCAGCTGTGCACTGGTGTCGTGACCCGCATCAGTCAGTCAGCTGTCACCGTGGCCTGTGAGGACTCGCCGGACGGACTCAACCTGGACACAGACGCTCTgtacaacctcatgaagctggctaaCGATGTCACGTACAAACGCATGAAAAAGGCCTTGAACACTCTGAATGGGTACAGCAGTGGACCAGCCTCGGATTTGATCAGCGTTCTCTTTGGCTATTCAGAACCTGGCTCGATATCACAACCAAATGATCTGTCTTTCCTGAACAGTGGTCTGGATGAGTCTCAGAGACAGGCGGTGTCCTTTGCTCTGTCTCAGAGAGAGGTAGCTGTAATACACGGGCCACCAGGCACCGGCAAGACAACCACTGTGGTGGAAATCATCCTACAAGTGGTCAAACGGGGACAGAAGGTCCTGTGCTGTGCTGGTTCTAACGTGGCCGTGGATAACCTGGTTGAGCGCCTGGCTAAGGCCAAAGCTAAGGTCCTGAGACTGGGCCACCCTGCCCGCCTGCTAGAGTCCATTCAGAAACACTCGCTAGACGCCGTCCTCGCTCACAGTGACAACACCAACATCATCGCCGACATACGCAAAGACATCGACAAAGCTTTTATGGGGATGAAGAAGATGAATGACAAACGAGATCGGATCCACCTgaagagggaggtaggagagcTGAGGAAAGAGCTGAGGACCagggaagctacagccattgctGAGGTCCTCAAACGTGCTGATGTTGTTCTAGCCACTAACACAGGTGCTAATGATGGTGGCCCTCTGAAGAACCTACCTGTAGACCATTTTGACTGGGTGGTGATCGATGAGTGTGCCCAGGCGTTGGAGAGCTCCTGCTGGATCGCTCTGCTCCGAGGCAGGAAGTGTATCCTGGCTGGAGATTACAAGCAGCTGCCACCCACCATCAAGTCTCACACGGCTGCATCTAAAGGCCTGTCTGTCAGCCTGATGGAGAGGTTGATCCTGAAGTATGGCGACTCCGTAGTCAGGATGCTGACAGTGCAGTACCGTATGAACAGTAACATCATGACCTGGGCCTCAGAACAGATGTACCAGGGTCAACTCGTCGCACACAGCTCAGTGGAGAAACACCTGCTCAAAGATCTCCCAGGAGTAGCCAGTGTTGAAGAGACcagcacccctctcctcctcatagaCACAGCAGGCTGTGGACTTAGTGAGATGGAGGTGGCAGACGAACAGTCCAAAGGAAACCAAGGTGAGGTGGACATTGTGGAACTGCACATCAAAGCGTTGACTGAAGCTGGGGTGAAACCTAAAGACATCGCTGTTATTGCCCCTTACAATCTGCAGGTGGATCTCCTGCGTCAGCGTCTCTCAGCGAGACATCCTGATCTGGAGATCAAGTCTGTAGACGGCTTccagggtagagagaaggaggcTGTGGTGCTGACCTTGGTCAGATCTAACAGGAAAGGTGAGATAGGGTTCTTAGCTGAAGACCGGAGGATCAACGTGGCGGTGACTCGAGCCAGACGTCACCTGGCCCTGGTGTGTGACACGCAGACCGTCCAGACCCACGGCTTCCTCAAGACCCTCATCGATCACATGACCCAGCACGGCGACGTACGCACCGCCTTTGAGTACCTGCAGGACATTGTGCCCCAGAACTACACCAGAGACCACCGAGATACCAAGTCTAACAACACTAAAGCTACCGCTAGCAACTCCGCCTCCAACAAGCAGAAGGGCAGAGGCCAGGCTGGGAGCAAGGTGGAGCCAGGACACAAGAGGACCTCTGGGGGTAACAAGACCCAGGGAGGAGAGCCCCAGACAGGTTCAGATCCCGGCACACACAGCCAAGCCAGACGTTCCACCCCcacagaggaggagcagagactGACACAGATAAAATACCTGGAGATCAAGAACCAGGTGGAGTGGTTTCTCCAGGACCCAGACCAGACGGAGCTACGGTTTCCCTCGACCCTCAACTCCCACGACCGCCTGCTCGTACACCAGGTTGCAGAGGAGCTGGGCCTGAACCATGAGAGCcagggagagggaaaggataGATGCATCACTGTCTCCAGACCCCCAACAGGGTCTAACGAGGCTGGGGAAGAAGAGGAGCAACAAGCCCAAGAACCATCAGCCGTCCGGGAGGAAGAGAGTGTTACAGGGCCTCCTGTAGGGCAACCGGCAGCAGATCTCAAGACTTTACATCTGGAACGAATGAGACGGGAGCAGAAGAAGAGGGAGCAGAAGATGGAGCAGGAGAAGCATCTAGATACCATCCGTACAGCAGGACAGACTCAGACTGCTAAGAAGACCAAGGCAAAAGGAAAGACCAAAAAGACCAAAGCGGGGGCCTGTGAGATCGCTGCGGCTGCGACGGCGGCTGATGATTTTGACACCCTAATAGATGCTGTGGTGAAGGCAGAACGCGTCTGTAGTTTTGTCAAGTGTAAAACGTTGGTAATTCATCTGGGACAACTCTGTCTGTTCTGCAACAGACAATACTGCCTCGGTCACCACATACCTGAGGTCCATGGGTGTGGAGACCAAGCCAGGGCCAATGCCAGGATGAGGATCAGTAAAGAAGGGGTTCTGTATGCTGGTAGTGGACACAAGGACAAGTCTGTAGATCCTAACAAGAAGGCCTATCTACACAGGAAGCTGGACTCCAAACTCAAAGACATGGAAAAGCAACGGAAGACCAAACCCAAAGAGAGTGACAATAATTGACCTTTGACccttttaattccagtttgtcagTGACTGTAAGCTCTGAGGAATGACCCTTTGTGGACTGAATAGATATAATTATTAAACAGATTACTGCTAAATTATTT

Function

symbol description
ighmbp2 Predicted to enable 5'-3' DNA helicase activity. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2S and distal spinal muscular atrophy 1. Orthologous to human IGHMBP2 (immunoglobulin mu DNA binding protein 2).

NR:

description
DNA-binding protein SMUBP-2 isoform X2

GO: NA

KEGG:

id description
K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578827.2 True 3397 mRNA 0.52 19 103283193 103317354

Neighbor

gene id symbol gene type direction distance location
LOC110501379 LOC106561844 coding downstream 53364 103226832 ~ 103229829 (-)
kif23 kif23 coding downstream 59957 103182386 ~ 103223236 (-)
LOC110501401 LOC106561857 coding downstream 141456 103134340 ~ 103141737 (-)
LOC110501464 snapc5 coding downstream 485398 102788284 ~ 102797795 (-)
LOC118944161 NA coding downstream 505815 102777280 ~ 102777378 (-)
gatd1 pddc1 coding upstream 13155 103330509 ~ 103334761 (-)
tmem258 NA coding upstream 25477 103342831 ~ 103345931 (-)
myrf LOC106561839 coding upstream 33592 103350946 ~ 103439912 (-)
ppp1r32 ppp1r32 coding upstream 380180 103697534 ~ 103722719 (-)
G214199 NA non-coding downstream 453 103282284 ~ 103282740 (-)
G214196 NA non-coding downstream 11400 103271507 ~ 103271793 (-)
G214182 NA non-coding downstream 28973 103253988 ~ 103254220 (-)
G214148 NA non-coding downstream 96866 103174478 ~ 103186327 (-)
G214146 NA non-coding downstream 112842 103169325 ~ 103170351 (-)
G214209 NA non-coding upstream 28809 103346163 ~ 103350430 (-)
G214219 NA non-coding upstream 63704 103381058 ~ 103382607 (-)
G214239 NA non-coding upstream 123753 103441107 ~ 103442523 (-)
G214399 NA non-coding upstream 129776 103447130 ~ 103478014 (-)
G214137 NA other downstream 125339 103156510 ~ 103157854 (-)
G214126 NA other downstream 160224 103121649 ~ 103122969 (-)
G214041 NA other downstream 419422 102863407 ~ 102863771 (-)
G214038 NA other downstream 435666 102844021 ~ 102847527 (-)
G214030 NA other downstream 463364 102819368 ~ 102819829 (-)
G214461 NA other upstream 281625 103598979 ~ 103599687 (-)

Expression


Co-expression Network