gatd1 (pddc1)


Basic Information

Item Value
gene id gatd1
gene name pddc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 103330509 ~ 103334761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961430.1
GGCTAGAGGAAGTCGATGTTGAACTGTGATCACTtcctgttttcattttttttttttaagcaatggTCTGAAGTAGCAGCCAACGGATTTGATCTTGGTAAACCACCGAAATGTCTTCTAAACCCACTTGTCTAATTGTGGCCAGTGCAGCTGCACAAGgAGTGTCTGCTCAGTCGTTCCATCAAGCCTTCTGTCTCTGCAGTTCAGTGTTCAACCTGCAGACCGCTACACCAGGGGGCAAGCCCATAGATTTTGTCGGGGTGGATGAAACCACGGCCAGATGGATCCAAGACTTCAGCCAAAAGTCTTTTGCAACCCCAGCCAAGCTGGAGTCAATAGACGGTGCTCGGTACCAAGCTCTGCTGATTCCAGACTGTCCTGGGGCGCTCACTGACCTGGCACACAGTGGCTCTCTGGCACGCATCCTCGCGCACTTCACCTCACAGCAGAAGGCGGTGTGCGCTATAGGACAAGGGGTATCTGGTCTGTGCTGCGCCATAGTAGAAGGACAGAAGTGGATCTTCACAGGCTACAGTCTCACTGGGCCGTCTGTGTTTGAGTTGGTGAGGAGCCCAGACTTTGCCAACCTGCCTCTGATCGTGGAGGACTTTGTCAAGGACAGCGGAGGATCGTACACCGCTAGTCAGGAGGACGCCGTGCATGTAGTGATCGACAGACACCTGGTGACCGGACAGAACATCCTGTCTACGTCAGTCGCTGTCAATAACCTCATCCTGCTCTGTAATGGAAAGTAACATGTCTTCAGTTCTGCTACGTGGGGACCAAGCTAAAAAGCCTTGGGCCGGGATTCAATCCGATCATGCTTTGACGGCCATgcgccatttttaaaaaggtaATCAGCCATTGAATCGACAAATGCAGCGTTTATCATGAATGCGTGGGAATGCGTTGCCTTTTAAGGAGCTACTGCCTTTGAAAAGCAACGAATCCATTTGGAAAATGGCCAATTTGGCGTCGATATGAGTTAGAAACCGTTGTTCTACTGTCAAAATTGACAAAGTGTAAAtcggataattttggtcataaagtggGTCTCGTCTAAAATGAAGTTTGGAACATCTGTGCGTCACAATgggtaaatgaaggttgggttttgatttgacgATGTCTATTTACTCACTGACATGGGGCGAACAGCTGCTGTGATTCCTCTCTATCCAATAGAAAAAACTGTGACTGACCTGCCCAGCAGCTCCAAGACAAGtcgcacattttttttttttaacctgagaaatactgcaccaaacaccttttTAGATGTAAAATTACACAACTATAACATCCTCGACAAAAACGTCTACATTTTTTCCCGATTtattgagttatcttagattcacTCTATTTTCAGGAAGTGAAATAGGCTTTGTGGGGGACAAACAGCATTAACTAAACCTCGGAGTCGGTCAGGAAACACACCCCCAAAACTGAAATCTGTTTCTCTAATAAGCAACAGAAAAACACGTGCCAATCGGCTGCTTCCGTGGCTCTTTTAAAAAGGTGCGTTGCCCACAAAGATCGGATTTAATCCCAGCCTTATTTTGACATGAACAGGATATGATTGATATGATTTAACAGGGCTCATcagagtacacatacagtaaaATAAAAACTGAACCTTTCAACTACACGTGTCGCAGGCAACATCTCAAAGTAGAGCTCCTTTACATTTAGTGCTATCAAGGACAAATATAAAGGTTCTGGGTACAGGGCATTTAGTAAGATATGAGGACATGCTGTACAACTCCTGTCTTATGTACTGTACACCAGAGTTGGTGCAATTCCatttcagaaagtaaaccaaattacAATTAGATTCCAATTCTACCTTttattgaagagaattggaatttcagtgctCAACCTGAATGGAATTGAGGCCAACCCTGCAGTCTACTACAGCAGAGGTTTGTAGTAcgagtagccccccccccccccaccccacacacacacgtcaagcCTAGTTCAGCAGCCACCGGTGAGGTATTAGAAAAAGTATCACTGTATGTATGTAGATTTCTATTGTCGATTTCCATTTGTATATTAAAAACAACACTGAACAATG
>XM_036961434.1
GGCTAGAGGAAGTCGATGTTGAACTGTGATCACTtcctgttttcattttttttttttaagcaatggTCTGAAGTAGCAGCCAACGGATTTGATCTTGGTAAACCACCGAAATGTCTTCTAAACCCACTTGTCTAATTGTGGCCAGTGCAGCTGCACAAGgAGTGTCTGCTCAGTCGTTCCATCAAGCCTTCTGTCTCTGCAGTTCAGTGTTCAACCTGCAGACCGCTACACCAGGGGGCAAGCCCATAGATTTTGTCGGGGTGGATGAAACCACGGCCAGATGGATCCAAGACTTCAGCCAAAAGTCTTTTGCAACCCCAGCCAAGCTGGAGTCAATAGACGGTGCTCGGTACCAAGCTCTGCTGATTCCAGACTGTCCTGGGGCGCTCACTGACCTGGCACACAGTGGCTCTCTGGCACGCATCCTCGCGCACTTCACCTCACAGCAGAAGGCGGTGTGCGCTATAGGACAAGGGGTATCTGGTCTGTGCTGCGCCATAGTAGAAGGACAGAAGTGGATCTTCACAGGCTACAGTCTCACTGGGCCGTCTGTGTTTGAGTTGGTGAGGAGCCCAGACTTTGCCAACCTGCCTCTGATCGTGGAGGACTTTGTCAAGGACAGCGGAGGATCGTACACCGTCAGGAGGACGCCGTGCATGTAGTGATCGACAGACACCTGGTGACCGGACAGAACATCCTGTCTACGTCAGTCGCTGTCAATAACCTCATCCTGCTCTGTAATGGAAAGTAACATGTCTTCAGTTCTGCTACGTGGGGACCAAGCTAAAAAGCCTTGGGCCGGGATTCAATCCGATCATGCTTTGACGGCCATgcgccatttttaaaaaggtaATCAGCCATTGAATCGACAAATGCAGCGTTTATCATGAATGCGTGGGAATGCGTTGCCTTTTAAGGAGCTACTGCCTTTGAAAAGCAACGAATCCATTTGGAAAATGGCCAATTTGGCGTCGATATGAGTTAGAAACCGTTGTTCTACTGTCAAAATTGACAAAGTGTAAAtcggataattttggtcataaagtggGTCTCGTCTAAAATGAAGTTTGGAACATCTGTGCGTCACAATgggtaaatgaaggttgggttttgatttgacgATGTCTATTTACTCACTGACATGGGGCGAACAGCTGCTGTGATTCCTCTCTATCCAATAGAAAAAACTGTGACTGACCTGCCCAGCAGCTCCAAGACAAGtcgcacattttttttttttaacctgagaaatactgcaccaaacaccttttTAGATGTAAAATTACACAACTATAACATCCTCGACAAAAACGTCTACATTTTTTCCCGATTtattgagttatcttagattcacTCTATTTTCAGGAAGTGAAATAGGCTTTGTGGGGGACAAACAGCATTAACTAAACCTCGGAGTCGGTCAGGAAACACACCCCCAAAACTGAAATCTGTTTCTCTAATAAGCAACAGAAAAACACGTGCCAATCGGCTGCTTCCGTGGCTCTTTTAAAAAGGTGCGTTGCCCACAAAGATCGGATTTAATCCCAGCCTTATTTTGACATGAACAGGATATGATTGATATGATTTAACAGGGCTCATcagagtacacatacagtaaaATAAAAACTGAACCTTTCAACTACACGTGTCGCAGGCAACATCTCAAAGTAGAGCTCCTTTACATTTAGTGCTATCAAGGACAAATATAAAGGTTCTGGGTACAGGGCATTTAGTAAGATATGAGGACATGCTGTACAACTCCTGTCTTATGTACTGTACACCAGAGTTGGTGCAATTCCatttcagaaagtaaaccaaattacAATTAGATTCCAATTCTACCTTttattgaagagaattggaatttcagtgctCAACCTGAATGGAATTGAGGCCAACCCTGCAGTCTACTACAGCAGAGGTTTGTAGTAcgagtagccccccccccccccaccccacacacacacgtcaagcCTAGTTCAGCAGCCACCGGTGAGGTATTAGAAAAAGTATCACTGTATGTATGTAGATTTCTATTGTCGATTTCCATTTGTATATTAAAAACAACACTGAACAATG

Function

NR:

description
Parkinson disease 7 domain-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961430.1 False 2083 mRNA 0.45 7 103330509 103334761
XM_036961434.1 True 2079 mRNA 0.45 7 103330509 103334761

Neighbor

gene id symbol gene type direction distance location
ighmbp2 ighmbp2 coding downstream 13155 103283193 ~ 103317354 (-)
LOC110501379 LOC106561844 coding downstream 100680 103226832 ~ 103229829 (-)
kif23 kif23 coding downstream 107273 103182386 ~ 103223236 (-)
LOC110501401 LOC106561857 coding downstream 188772 103134340 ~ 103141737 (-)
LOC110501464 snapc5 coding downstream 532714 102788284 ~ 102797795 (-)
tmem258 NA coding upstream 8070 103342831 ~ 103345931 (-)
myrf LOC106561839 coding upstream 16185 103350946 ~ 103439912 (-)
ppp1r32 ppp1r32 coding upstream 362773 103697534 ~ 103722719 (-)
G214199 NA non-coding downstream 47769 103282284 ~ 103282740 (-)
G214196 NA non-coding downstream 58716 103271507 ~ 103271793 (-)
G214182 NA non-coding downstream 76289 103253988 ~ 103254220 (-)
G214148 NA non-coding downstream 144182 103174478 ~ 103186327 (-)
G214146 NA non-coding downstream 160158 103169325 ~ 103170351 (-)
G214209 NA non-coding upstream 11402 103346163 ~ 103350430 (-)
G214219 NA non-coding upstream 46297 103381058 ~ 103382607 (-)
G214239 NA non-coding upstream 106346 103441107 ~ 103442523 (-)
G214399 NA non-coding upstream 112369 103447130 ~ 103478014 (-)
G214207 NA other downstream 15576 103314288 ~ 103314933 (-)
G214137 NA other downstream 172655 103156510 ~ 103157854 (-)
G214126 NA other downstream 207540 103121649 ~ 103122969 (-)
G214041 NA other downstream 466738 102863407 ~ 102863771 (-)
G214038 NA other downstream 482982 102844021 ~ 102847527 (-)
G214461 NA other upstream 264218 103598979 ~ 103599687 (-)

Expression


Co-expression Network