G104602


Basic Information

Item Value
gene id G104602
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 877412 ~ 878655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU117621
CAAGTTCTGGTGGGCTTACGGGCCAAATCCACACAATACCTGGTACCAAGTTCTGGTGGGCTGACAGGCCAAATCCACACCTAACCTGGTACCAAGTTCTGGTGGGCTGACAGGCCAAATCCACACCTAACCTGGTACCAAGTTCTGGTGGGCTTACAGGCCAAATCCACACCACACCTGGTATCTTCACGTCAAAAGGAATCTTTATTTCCAAATTACTCACTTTTTTCCCAAAGATTATGGTTCAGCTATTCCGCTTTGAAGTCAATGGAAGTAGGGCTTGTCTTTTACACCAAAACCAtgtcaatacaatacaataatatatatatatatatatatatatgaaagagGTGTTATGGGAAGCCCATTTAATCATATGAGAGTTGGTGTGCAGTAGATGTACAGTCTTGTTTCTTGTGAGATGGTAATCCACTAGGTCAGTGGGGCACGCAAGATttggccccctattctctatattaGTGCACTTACCCGGGTtaaaaaagtagttcactatgtaggggatagtgTGCCGTTTGGGAGGTGCTGAGATCCATGTAGAGTCGTGTACAGTATGTTTTGGAAGTGTTTCTGCCGGGCTGAGTTGAGTTCACTCCAGTGTTTCTTTTAAAGAGGCGTCCTAATATAGAGGAAGCGTCTCCATGGATATAAAGGGGAAATGTCATGTGACTTCCTGTCTTGTCTGGGGGAAAAAAAAGGGGTCCACGATGTTAAAAGGGATTTCTCTGACCTCCATTTTCTCCTTCAGTCCCTTACAATTGTGATCAatgattatttatatttttaaatttGTTTTAAACCAACGTTATTTTACAGCAGCTGTTTCATTACTCACTCCTGTAAAAGATTTGCAGACCacaatgcaatgtacagtagatAACAATTATATTTTAGAACCTACCGC
>TU117623
CAAGTTCTGGTGGGCTTACGGGCCAAATCCACACAATACCTGGTACCAAGTTCTGGTGGGCTGACAGCCCAAATCCACACCTAACCTGGTACCAAGTTCTGGTGGGCTGACAGGCCAAATCCACACCTAACCTGGTACCAAGTTCTGGTGGGCTGACAGGCCAAATCCACACCTAACCTGGTACCAAGTTCTGGTGGGCTTACAGGCCAAATCCACACCACACCTGGTATCTTCACGTCAAAAGGAATCTTTATTTCCAAATTACTCACTTTTTTCCCAAAGATTATGGTTCAGCTATTCCGCTTTGAAGTCAATGGAAGTAGGGCTTGTCTTTTACACCAAAACCAtgtcaatacaatacaataatatatatatatatatatatatatgaaagagGTGTTATGGGAAGCCCATTTAATCATATGAGAGTTGGTGTGCAGTAGATGTACAGTCTTGTTTCTTGTGAGATGGTAATCCACTAGGTCAGTGGGGCACGCAAGATttggccccctattctctatattaGTGCACTTACCCGGGTtaaaaaagtagttcactatgtaggggatagtgTGCCGTTTGGGAGGTGCTGAGATCCATGTAGAGTCGTGTACAGTATGTTTTGGAAGTGTTTCTGCCGGGCTGAGTTGAGTTCACTCCAGTGTTTCTTTTAAAGAGGCGTCCTAATATAGAGGAAGCGTCTCCATGGATATAAAGGGGAAATGTCATGTGACTTCCTGTCTTGTCTGGGGGAAAAAAAAGGGGTCCACGATGTTAAAAGGGATTTCTCTGACCTCCATTTTCTCCTTCAGTCCCTTACAATTGTGATCAatgattatttatatttttaaatttGTTTTAAACCAACGTTATTTTACAGCAGCTGTTTCATTACTCACTCCTGTAAAAGATTTGCAGACCacaatgcaatgtacagtagatAACAATTATATTTTAGAACCTACCGC
>TU117624
CAAGTTCTGGTGGGCTTACGGGCCAAATCCACACAATACCTGGTACCAAGTTCTGGTGGGCTGACAGGCCAAATCCACACCTAACCTGGTACCAAGTTCTGGTGGGCTGACAGGCCAAATCCACACCACACCTGGTATCTTCACGTCAAAAGGAATCTTTATTTCCAAATTACTCACTTTTTTCCCAAAGATTATGGTTCAGCTATTCCGCTTTGAAGTCAATGGAAGTAGGGCTTGTCTTTTACACCAAAACCAtgtcaatacaatacaataatatatatatatatatatatatatgaaagagGTGTTATGGGAAGCCCATTTAATCATATGAGAGTTGGTGTGCAGTAGATGTACAGTCTTGTTTCTTGTGAGATGGTAATCCACTAGGTCAGTGGGGCACGCAAGATttggccccctattctctatattaGTGCACTTACCCGGGTtaaaaaagtagttcactatgtaggggatagtgTGCCGTTTGGGAGGTGCTGAGATCCATGTAGAGTCGTGTACAGTATGTTTTGGAAGTGTTTCTGCCGGGCTGAGTTGAGTTCACTCCAGTGTTTCTTTTAAAGAGGCGTCCTAATATAGAGGAAGCGTCTCCATGGATATAAAGGGGAAATGTCATGTGACTTCCTGTCTTGTCTGGGGGAAAAAAAAGGGGTCCACGATGTTAAAAGGGATTTCTCTGACCTCCATTTTCTCCTTCAGTCCCTTACAATTGTGATCAatgattatttatatttttaaatttGTTTTAAACCAACGTTATTTTACAGCAGCTGTTTCATTACTCACTCCTGTAAAAGATTTGCAGACCacaatgcaatgtacagtagatAACAATTATATTTTAGAACCTACCGC
>TU117626
CAAGTTCTGGTGGGCTTACGGGCCAAATCCACACAATACCTGGTACCAAGTTCTGGTGGGCTGACAGCCCAAATCCACACCTAACCTGGTACCAAGTTCTGGTGGGCTGACAGGCCAAATCCACACCTAACCTGGTACCAAGTTCTGGTGGGCTGACAGGCCAAATCCACACCACACCTGGTATCTTCACGTCAAAAGGAATCTTTATTTCCAAATTACTCACTTTTTTCCCAAAGATTATGGTTCAGCTATTCCGCTTTGAAGTCAATGGAAGTAGGGCTTGTCTTTTACACCAAAACCAtgtcaatacaatacaataatatatatatatatatatatatatgaaagagGTGTTATGGGAAGCCCATTTAATCATATGAGAGTTGGTGTGCAGTAGATGTACAGTCTTGTTTCTTGTGAGATGGTAATCCACTAGGTCAGTGGGGCACGCAAGATttggccccctattctctatattaGTGCACTTACCCGGGTtaaaaaagtagttcactatgtaggggatagtgTGCCGTTTGGGAGGTGCTGAGATCCATGTAGAGTCGTGTACAGTATGTTTTGGAAGTGTTTCTGCCGGGCTGAGTTGAGTTCACTCCAGTGTTTCTTTTAAAGAGGCGTCCTAATATAGAGGAAGCGTCTCCATGGATATAAAGGGGAAATGTCATGTGACTTCCTGTCTTGTCTGGGGGAAAAAAAAGGGGTCCACGATGTTAAAAGGGATTTCTCTGACCTCCATTTTCTCCTTCAGTCCCTTACAATTGTGATCAatgattatttatatttttaaatttGTTTTAAACCAACGTTATTTTACAGCAGCTGTTTCATTACTCACTCCTGTAAAAGATTTGCAGACCacaatgcaatgtacagtagatAACAATTATATTTTAGAACCTACCGC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU117621 False 922 lncRNA 0.41 3 877412 878655
TU117623 False 968 lncRNA 0.48 2 877412 878655
TU117624 False 876 lncRNA 0.53 3 877412 878655
TU117626 True 922 lncRNA 0.54 2 877412 878655

Neighbor

gene id symbol gene type direction distance location
eomesb eomesb coding downstream 64222 806150 ~ 813190 (-)
LOC110516483 LOC106573240 coding downstream 86541 727654 ~ 790871 (-)
LOC118937315 NA coding downstream 200900 672497 ~ 676512 (-)
LOC118937314 NA coding downstream 369343 423319 ~ 508560 (-)
LOC118937313 NA coding downstream 394222 476561 ~ 484071 (-)
azi2 azi2 coding upstream 1163 879818 ~ 905418 (-)
LOC118937319 NA coding upstream 437009 1314565 ~ 1316245 (-)
LOC110515934 gadl1 coding upstream 548596 1427251 ~ 1457133 (-)
LOC110515405 LOC106590999 coding upstream 694747 1573402 ~ 1683489 (-)
kiaa1143 k1143 coding upstream 824296 1702951 ~ 1704863 (-)
G104625 NA non-coding downstream 494 876632 ~ 876918 (-)
G104603 NA non-coding downstream 4759 871311 ~ 872653 (-)
G104621 NA non-coding downstream 9193 867753 ~ 868219 (-)
G104620 NA non-coding downstream 9497 866022 ~ 867915 (-)
G104588 NA non-coding downstream 90626 786100 ~ 786786 (-)
G104604 NA non-coding upstream 142 878797 ~ 879653 (-)
G104631 NA non-coding upstream 34240 912895 ~ 913222 (-)
G104632 NA non-coding upstream 35528 914183 ~ 914393 (-)
G104633 NA non-coding upstream 37239 915894 ~ 916311 (-)
G104634 NA non-coding upstream 38636 917291 ~ 924347 (-)
G105220 NA other upstream 455331 1333986 ~ 1342335 (-)
G105285 NA other upstream 662075 1540730 ~ 1541706 (-)
G105340 NA other upstream 762612 1641267 ~ 1641732 (-)
G105427 NA other upstream 1033937 1912592 ~ 1917188 (-)

Expression


Co-expression Network