G104603


Basic Information

Item Value
gene id G104603
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 871311 ~ 872653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU117628
TGTACGTTAACACAATGTCAAGTCAAATGTTATATTAAAAATCAGacctttttttttacaacaaCTCTACCCATAATGCTTCACCGGTCATCACACCAGTAGTTACGGCAACCCACCGGTGAATCCTAACTACGGGATAAAGCCTCTATGCAGTATCAATCTTGTGTATAATTATGAACCTTCCGGAACATTCTCAGAGTGGAGGATGTTGGGATGTCAACACCTTGACTATTATTCATGGACTTTGGACAGGTCTTATATCATTGGAATCAATCTCACTTTGGACAGTATTGGTTGCTAACAAACTCAACATGAAAACGTTTCCAAAGCATTGACAGAAAAAATTCTTCATAAATATACAAActgcagagcagacagacagcatcaacaacaaaacattattgGATCATTCTGAAATAGGAGGAACAGTGTGATTTTTCCATCATGGCTGTTAGATCAGATCAACCAGAGAGACTCTGTTGAGGAACACGTATCTGTAAGAGATTTATTTTCCCTACATACAGGTGAACGGAGGCCTTTAGACACACCTTGCCAATCTGCCTCGTAGTCGTTACACAGGTCACTTAGGGCCTAGGATGACCTCCTGTCTCCTGCCACTTCGTTGATCTAGTTCCTCCCGTTGGGGCAATGAGCATCCCAACCGGATGTACAATACACACACTGTAAAGCCCCGTGAGTAGCCCTCACTCCCCCTGCCACCCTCCGTGACCCCTAGCCCCTGCTACCGAACCAATCCcgtagatctgagaggattggacatgTGGAAGCAACatggtcaggggtcaggggtcaattTGGAACCTACATGCTGGTTGGTAGTTTTTGTGAGCGGTTCTTAGCCGCCACCCCTGTCCTCTGGTACTCCAGCTTCTCCTTGATGTACTCCTGCTTGCACTCCTCGAATAACGCAGAGTCTCtg
>TU117629
GTAATAAGACTTCAAATAGGTATTTCAAGggacattgaaaaaaaaaaacagaagtgtGATTGTGAACCTGGAAGTCATTCCTTGTGACACCTGTATGGTTTAAAAAGCAGaagtcacaacacacacacacacagagaggctaGAAGATCTGTTTGTCTTTATTTATATGTACGTTAACACAATGTCAAGTCAAATGTTATATTAAAAATCAGacctttttttttacaacaaCTCTACCCATAATGCTTCACCGGTCATCACACCAGTAGTTACGGCAACCCACCGGTGAATCCTAACTACGGGATAAAGCCTCTATGCAGTATCAATCTTGTGTATAATTATGAACCTTCCGGAACATTCTCAGAGTGGAGGATGTTGGGATGTCAACACCTTGACTATTATTCATGGACTTTGGACAGGTCTTATATCATTGGAATCAATCTCACTTTGGACAGTATTGGTTGCTAACAAACTCAACATGAAAACGTTTCCAAAGCATTGACAGAAAAAATTCTTCATAAATATACAAActgcagagcagacagacagcatcaacaacaaaacattattgGATCATTCTGAAATAGGAGGAACAGTGTGATTTTTCCATCATGGCTGTTAGATCAGATCAACCAGAGAGACTCTGTTGAGGAACACGTATCTGTAAGAGATTTATTTTCCCTACATACAGGTGAACGGAGGCCTTTAGACACACCTTGCCAATCTGCCTCGTAGTCGTTACACAGGTCACTTAGGGCCTAGGATGACCTCCTGTCTCCTGCCACTTCGTTGATCTAGTTCCTCCCGTTGGGGCAATGAGCATCCCAACCGGATGTACAATACACACACTGTAAAGCCCCGTGAGTAGCCCTCACTCCCCCTGCCACCCTCCGTGACCCCTAGCCCCTGCTACCGAACCAATCCcgtagatctgagaggattggacatgTGGAAGCAACatggtcaggggtcaggggtcaattTGGAACCTACATGCTGGTTGGTAGTTTTTGTGAGCGGTTCTTAGCCGCCACCCCTGTCCTCTGGTACTCCAGCTTCTCCTTGATGTACTCCTGCTTGCACTCCTCGAATAACGCAGAGTCTCtg
>TU117632
GTAATAAGACTTCAAATAGGTATTTCAAGggacattgaaaaaaaaaaacagaagtgtGATTGTGAACCTGGAAGTCATTCCTTGTGACACCTGTATGGTTTAAAAAGCAGaagtcacaacacacacacacacagagaggctaGAAGATCTGTTTGTCTTTATTTATATGTACGTTAACACAATGTCAAGTCAAATGTTATATTAAAAATCAGacctttttttttacaacaaCTCTACCCATAATGCTTCACCGGTCATCACACCAGTAGTTACGGCAACCCACCGGTGAATCCTAACTACGGGATAAAGCCTCTATGCAGTATCAATCTTGTGTATAATTATGAACCTTCCGGAACATTCTCAGAGTGGAGGATGTTGGGATGTCAACACCTTGACTATTATTCATGGACTTTGGACAGGTCTTATATCATTGGAATCAATCTCACTTTGGACAGTATTGGTTGCTAACAAACTCAACATGAAAACGTTTCCAAAGCATTGACAGAAAAAATTCTTCATAAATATACAAActgcagagcagacagacagcatcaacaacaaaacattattgGATCATTCTGAAATAGGAGGAACAGTGTGATTTTTCCATCATGGCTGTTAGATCAGATCAACCAGAGGGACTCTGTTGAGAACACGTATCTGTAAGAGATTTATTTTCCCTACATACAGGTGAACGGAGGCCTTTAGACACACCTTGCCAATCTGCCTCGTAGTCGTTACACAGGTCACTTAGGGCCTAGGATGACCTCCTGTCTCCTGCCACTTCGTTGATCTAGTTCCTCCCGTTGGGGCAATGAGCATCCCAACCGGATGTACAATACACACACTGTAAAGCCCCGTGAGTAGCCCTCACTCCCCCTGCCACCCTCCGTGACCCCTAGCCCCTGCTACCGAACCAATCCcgtagatctgagaggattggacatgTGGAAGCAACatggtcaggggtcaggggtcaattTGGAACCTACATGCTGGTTGGTAGTTTTTGTGAGCGGTTCTTAGCCGCCACCCCTGTCCTCTGGTACTCCAGCTTCTCCTTGATGTACTCCTGCTTGCACTCCTCGAATAACGCAGAGTCTCtg
>TU117633
TGTACGTTAACACAATGTCAAGTCAAATGTTATATTAAAAATCAGacctttttttttacaacaaCTCTACCCATAATGCTTCACCGGTCATCACACCAGTAGTTACGGCAACCCACCGGTGAATCCTAACTACGGGATAAAGCCTCTATGCAGTATCAATCTTGTGTATAATTATGAACCTTCCGGAACATTCTCAGAGTGGAGGATGTTGGGATGTCAACACCTTGACTATTATTCATGGACTTTGGACAGGTCTTATATCATTGGAATCAATCTCACTTTGGACAGTATTGGTTGCTAACAAACTCAACATGAAAACGTTTCCAAAGCATTGACAGAAAAAATTCTTCATAAATATACAAActgcagagcagacagacagcatcaacaacaaaacattattgGATCATTCTGAAATAGGAGGAACAGTGTGATTTTTCCATCATGGCTGTTAGATCAGATCAACCAGAGGGACTCTGTTGAGAACACGTATCTGTAAGAGATTTATTTTCCCTACATACAGGTGAACGGAGGCCTTTAGACACACCTTGCCAATCTGCCTCGTAGTCGTTACACAGGTCACTTAGGGCCTAGGATGACCTCCTGTCTCCTGCCACTTCGTTGATCTAGTTCCTCCCGTTGGGGCAATGAGCATCCCAACCGGATGTACAATACACACACTGTAAAGCCCCGTGAGTAGCCCTCACTCCCCCTGCCACCCTCCGTGACCCCTAGCCCCTGCTACCGAACCAATCCcgtagatctgagaggattggacatgTGGAAGCAACatggtcaggggtcaggggtcaattTGGAACCTACATGCTGGTTGGTAGTTTTTGTGAGCGGTTCTTAGCCGCCACCCCTGTCCTCTGGTACTCCAGCTTCTCCTTGATGTACTCCTGCTTGCACTCCTCGAATAACGCAGAGTCTCtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117628 False 940 lncRNA 0.45 2 871311 872486
TU117629 False 1107 lncRNA 0.40 2 871311 872653
TU117632 False 1106 lncRNA 0.38 2 871311 872653
TU117633 True 939 lncRNA 0.50 2 871311 872486

Neighbor

gene id symbol gene type direction distance location
eomesb eomesb coding downstream 58121 806150 ~ 813190 (-)
LOC110516483 LOC106573240 coding downstream 80440 727654 ~ 790871 (-)
LOC118937315 NA coding downstream 194799 672497 ~ 676512 (-)
LOC118937314 NA coding downstream 363242 423319 ~ 508560 (-)
LOC118937313 NA coding downstream 388121 476561 ~ 484071 (-)
azi2 azi2 coding upstream 7165 879818 ~ 905418 (-)
LOC118937319 NA coding upstream 443011 1314565 ~ 1316245 (-)
LOC110515934 gadl1 coding upstream 554598 1427251 ~ 1457133 (-)
LOC110515405 LOC106590999 coding upstream 700749 1573402 ~ 1683489 (-)
kiaa1143 k1143 coding upstream 830298 1702951 ~ 1704863 (-)
G104621 NA non-coding downstream 3092 867753 ~ 868219 (-)
G104620 NA non-coding downstream 3396 866022 ~ 867915 (-)
G104588 NA non-coding downstream 84525 786100 ~ 786786 (-)
G104571 NA non-coding downstream 128279 742125 ~ 743032 (-)
G104564 NA non-coding downstream 153843 716673 ~ 717468 (-)
G104625 NA non-coding upstream 3979 876632 ~ 876918 (-)
G104602 NA non-coding upstream 4759 877412 ~ 878655 (-)
G104604 NA non-coding upstream 6144 878797 ~ 879653 (-)
G104631 NA non-coding upstream 40242 912895 ~ 913222 (-)
G104632 NA non-coding upstream 41530 914183 ~ 914393 (-)
G105220 NA other upstream 461333 1333986 ~ 1342335 (-)
G105285 NA other upstream 668077 1540730 ~ 1541706 (-)
G105340 NA other upstream 768614 1641267 ~ 1641732 (-)
G105427 NA other upstream 1039939 1912592 ~ 1917188 (-)

Expression


Co-expression Network