RNA id: TU117629


Basic Information

Item Value
RNA id TU117629
length 1107
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G104603
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 871311 ~ 872653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATAAGACTTCAAATAGGTATTTCAAGggacattgaaaaaaaaaaacagaagtgtGATTGTGAACCTGGAAGTCATTCCTTGTGACACCTGTATGGTTTAAAAAGCAGaagtcacaacacacacacacacagagaggctaGAAGATCTGTTTGTCTTTATTTATATGTACGTTAACACAATGTCAAGTCAAATGTTATATTAAAAATCAGacctttttttttacaacaaCTCTACCCATAATGCTTCACCGGTCATCACACCAGTAGTTACGGCAACCCACCGGTGAATCCTAACTACGGGATAAAGCCTCTATGCAGTATCAATCTTGTGTATAATTATGAACCTTCCGGAACATTCTCAGAGTGGAGGATGTTGGGATGTCAACACCTTGACTATTATTCATGGACTTTGGACAGGTCTTATATCATTGGAATCAATCTCACTTTGGACAGTATTGGTTGCTAACAAACTCAACATGAAAACGTTTCCAAAGCATTGACAGAAAAAATTCTTCATAAATATACAAActgcagagcagacagacagcatcaacaacaaaacattattgGATCATTCTGAAATAGGAGGAACAGTGTGATTTTTCCATCATGGCTGTTAGATCAGATCAACCAGAGAGACTCTGTTGAGGAACACGTATCTGTAAGAGATTTATTTTCCCTACATACAGGTGAACGGAGGCCTTTAGACACACCTTGCCAATCTGCCTCGTAGTCGTTACACAGGTCACTTAGGGCCTAGGATGACCTCCTGTCTCCTGCCACTTCGTTGATCTAGTTCCTCCCGTTGGGGCAATGAGCATCCCAACCGGATGTACAATACACACACTGTAAAGCCCCGTGAGTAGCCCTCACTCCCCCTGCCACCCTCCGTGACCCCTAGCCCCTGCTACCGAACCAATCCcgtagatctgagaggattggacatgTGGAAGCAACatggtcaggggtcaggggtcaattTGGAACCTACATGCTGGTTGGTAGTTTTTGTGAGCGGTTCTTAGCCGCCACCCCTGTCCTCTGGTACTCCAGCTTCTCCTTGATGTACTCCTGCTTGCACTCCTCGAATAACGCAGAGTCTCtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117657 lncRNA downstream 3092 867753 ~ 868219 (-) True G104621
TU117656 lncRNA downstream 3396 866022 ~ 867915 (-) True G104620
TU117596 lncRNA downstream 84525 786100 ~ 786786 (-) True G104588
TU117571 lncRNA downstream 128279 742125 ~ 743032 (-) False G104571
TU117661 lncRNA upstream 3979 876632 ~ 876918 (-) True G104625
TU117621 lncRNA upstream 4759 877412 ~ 878655 (-) False G104602
TU117623 lncRNA upstream 4759 877412 ~ 878655 (-) False G104602
TU117624 lncRNA upstream 4759 877412 ~ 878655 (-) False G104602
TU117626 lncRNA upstream 4759 877412 ~ 878655 (-) True G104602
NM_001281390.1 mRNA downstream 58121 806150 ~ 813190 (-) True eomesb
XM_036934898.1 mRNA downstream 80440 727654 ~ 790871 (-) False LOC110516483
XR_005034562.1 mRNA downstream 80440 727654 ~ 790871 (-) True LOC110516483
XM_036934866.1 mRNA downstream 194799 672497 ~ 676512 (-) True LOC118937315
XR_005034560.1 mRNA downstream 363242 507378 ~ 508069 (-) False LOC118937314
XM_036934936.1 mRNA upstream 7165 879818 ~ 905415 (-) False azi2
XM_036934934.1 mRNA upstream 7165 879818 ~ 905418 (-) True azi2
XR_005034579.1 mRNA upstream 443011 1315664 ~ 1316080 (-) False LOC118937319
XR_005034578.1 mRNA upstream 443011 1315664 ~ 1316245 (-) False LOC118937319
XM_036935016.1 mRNA upstream 554598 1427251 ~ 1457133 (-) True LOC110515934
TU118548 other upstream 461333 1333986 ~ 1342335 (-) False G105220
TU118550 other upstream 461333 1333986 ~ 1342335 (-) False G105220
TU118552 other upstream 461333 1333986 ~ 1342335 (-) True G105220
TU118668 other upstream 668077 1540730 ~ 1541706 (-) True G105285
TU118629 other upstream 721128 1593781 ~ 1619036 (-) False LOC110515405

Expression Profile