RNA id: TU117596


Basic Information

Item Value
RNA id TU117596
length 337
lncRNA type intronic
GC content 0.41
exon number 2
gene id G104588
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 786100 ~ 786786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTCCTACACTCTGTCTGGGTACTGTCTCCTACACTCTGTCTGGGTACTGTCCTCTACAGTCTGTCTGGGTACTGTCTCTTACAGTCTGTCTGGGTACTGTCTCCTACAGCCTGTCTAGGTACTGTCTCCTACAGCCTGTCTGGGTACTGTCTCCTACAGCCTGTCTGGGTACTGTCTCCTACAGCCTGTCTGGGTACTGTCTCCTACAGCCTGTCTGGGTACTGTCTCCTACAGCCTGTCTGGGTACTGTCTCCTACAGCCTGTCTGGGTACTGTCTCCTACAGCCTGTCTGGGTACTGTCTCCTACAGTCTGTCTGGGTACTGTCTCCTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117570 lncRNA downstream 43068 742125 ~ 743032 (-) False G104571
TU117571 lncRNA downstream 43068 742125 ~ 743032 (-) False G104571
TU117574 lncRNA downstream 43068 742125 ~ 743032 (-) True G104571
TU117563 lncRNA downstream 68632 716673 ~ 717468 (-) True G104564
TU117541 lncRNA downstream 70321 715267 ~ 715779 (-) True G104560
TU117656 lncRNA upstream 79236 866022 ~ 867915 (-) True G104620
TU117657 lncRNA upstream 80967 867753 ~ 868219 (-) True G104621
TU117628 lncRNA upstream 84525 871311 ~ 872486 (-) False G104603
TU117629 lncRNA upstream 84525 871311 ~ 872653 (-) False G104603
TU117632 lncRNA upstream 84525 871311 ~ 872653 (-) False G104603
XM_036934866.1 mRNA downstream 109588 672497 ~ 676512 (-) True LOC118937315
XR_005034560.1 mRNA downstream 278031 507378 ~ 508069 (-) False LOC118937314
XR_005034558.1 mRNA downstream 302910 480038 ~ 483190 (-) False LOC118937313
NM_001281390.1 mRNA upstream 19364 806150 ~ 813190 (-) True eomesb
XM_036934936.1 mRNA upstream 93032 879818 ~ 905415 (-) False azi2
XM_036934934.1 mRNA upstream 93032 879818 ~ 905418 (-) True azi2
XR_005034579.1 mRNA upstream 528878 1315664 ~ 1316080 (-) False LOC118937319
XR_005034578.1 mRNA upstream 528878 1315664 ~ 1316245 (-) False LOC118937319
TU118548 other upstream 547200 1333986 ~ 1342335 (-) False G105220
TU118550 other upstream 547200 1333986 ~ 1342335 (-) False G105220
TU118552 other upstream 547200 1333986 ~ 1342335 (-) True G105220
TU118668 other upstream 753944 1540730 ~ 1541706 (-) True G105285
TU118629 other upstream 806995 1593781 ~ 1619036 (-) False LOC110515405

Expression Profile