G104730


Basic Information

Item Value
gene id G104730
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1066580 ~ 1067219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU117798
GTGGTGGCAGCGACAGGATAAAATACACCTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGGGTTGTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATATGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGGGTTGTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATATGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGCTCTATGTGTTGTACCTGTCTGTAATAGGCTGTTAGAAGGCAGGTAGACAGAGTGGGATGGGACGGCTGTTTGTAGGAGAGATTGCCTGAGTTTATTACACAGTTATTATTATGCTGAAATCattggatccc
>TU117799
GTGGTGGCAGCGACAGGATAAAATACACCTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATATGTTCCACCTGTCTGTAACAGGCTGTTAGAAGGCTCTATGTGTTGTACCTGTCTGTAATAGGCTGTTAGAAGGCAGGTAGACAGAGTGGGATGGGACGGCTGTTTGTAGGAGAGATTGCCTGAGTTTATTACACAGTTATTATTATGCTGAAATCattggatccc
>TU117800
GTGGTGGCAGCGACAGGATAAAATACACCTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTATatgtgttatacctgtctgtAATAGGCTGTTAGAAGGTTCTATGTGTTCTacctgtctgcaataggctgttAGAAAGTTCTATGCGTTCTACCTATCTGTAATAGACTGTTAGAAGGTTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGCTCTATGTGTTGTACCTGTCTGTAATAGGCTGTTAGAAGGCAGGTAGACAGAGTGGGATGGGACGGCTGTTTGTAGGAGAGATTGCCTGAGTTTATTACACAGTTATTATTATGCTGAAATCattggatccc
>TU117801
GTGGTGGCAGCGACAGGATAAAATACACCTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGTTCTATGTGTTCTACCTGTCTGTAATAGGCTGTTAGAAGGCTCTATGTGTTGTACCTGTCTGTAATAGGCTGTTAGAAGGCAGGTAGACAGAGTGGGATGGGACGGCTGTTTGTAGGAGAGATTGCCTGAGTTTATTACACAGTTATTATTATGCTGAAATCattggatccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117798 False 480 lncRNA 0.40 2 1066580 1067219
TU117799 False 320 lncRNA 0.38 2 1066580 1067219
TU117800 False 440 lncRNA 0.31 3 1066580 1067219
TU117801 True 320 lncRNA 0.43 3 1066580 1067219

Neighbor

gene id symbol gene type direction distance location
LOC118936923 NA coding upstream 97052 968616 ~ 969528 (+)
LOC110506977 LOC106595099 coding upstream 158004 905576 ~ 908576 (+)
cmc1 cc068 coding upstream 194066 860459 ~ 872515 (+)
LOC118937316 LOC106573240 coding upstream 340605 724791 ~ 731551 (+)
zgc:110410 LOC106594189 coding upstream 344187 714730 ~ 722393 (+)
LOC110515032 LOC106606177 coding downstream 154911 1222130 ~ 1224904 (+)
tgfbr2b LOC106606173 coding downstream 241983 1309202 ~ 1390936 (+)
LOC118937323 NA coding downstream 357097 1424316 ~ 1426453 (+)
stt3b stt3b coding downstream 389117 1456336 ~ 1564305 (+)
LOC118937324 NA coding downstream 503091 1570310 ~ 1573421 (+)
G104722 NA non-coding upstream 18434 1047586 ~ 1048146 (+)
G104716 NA non-coding upstream 31814 1032044 ~ 1034766 (+)
G104711 NA non-coding upstream 38432 1027631 ~ 1028148 (+)
G104690 NA non-coding upstream 57466 1008879 ~ 1009114 (+)
G104685 NA non-coding upstream 72680 993601 ~ 993900 (+)
G104746 NA non-coding downstream 42958 1110177 ~ 1111073 (+)
G104756 NA non-coding downstream 71972 1139191 ~ 1139974 (+)
G104770 NA non-coding downstream 105189 1172408 ~ 1173528 (+)
G104771 NA non-coding downstream 106436 1173655 ~ 1174059 (+)
G104776 NA non-coding downstream 115117 1182336 ~ 1183718 (+)
G104092 NA other upstream 365309 690046 ~ 701271 (+)
G103851 NA other upstream 885558 174996 ~ 181022 (+)
G104761 NA other downstream 85842 1153061 ~ 1153749 (+)
G105036 NA other downstream 631854 1699073 ~ 1700431 (+)
G105042 NA other downstream 641750 1708969 ~ 1710557 (+)
G106019 NA other downstream 1453497 2520716 ~ 2527972 (+)

Expression


Co-expression Network