XLOC_020775 (zfr2)


Basic Information

Item Value
gene id XLOC_020775
gene name zfr2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5056288 ~ 5099824 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040968
TGCTGCTGCTGAAGTTTCTATGATGGCGGCCAGTAATTATTATGGATTCACACATGCAGCTGCAGCTGCCGCCGGCCCGCAGTACAgCACTCAGCCGCCTCCTGCCTATTCCCACCCAACCACGGGCAGCTATAATGTCCAGCCTGCACCCGGAGTGGCTCATGCTGTGACGGCATCATACCCTGCACCCACTGCCCAGCCGGCACGTCCTGCAGTAACAGCACCATACCCCACCTACCAGCCCCATCCGGCCCCAAATTATGGCTACCGCCAGCCTGAGACGACCCCGCAGCCCACCACCACTCCTCAAACATACCAGGTGTTGACTGAACcgGAGAATTATACATATGGGCGACCACCGCCTGTCAGCAGTTATGAGAACAAGCAGTACTTTCAAACCAGCATCGCACCAGCGCAACGACCTGCGACAGAGGCCTACTTCCAGACAGGTCTAAAAAGTGGCTACAGCCCGGCAAGCACAGCGTACAACCAGCCGCCGGTTCAAAGACAGGTGGCAGCCCTGAAACCTCCGCCCGCTGTGAGCTCCGTATCTTCCAGCTACACCATCTACCCCACATCCACCAGCGTTCAGCAAAGCCCAGCGCCCAGCTCCTCTTTCAACTCCACAGCTGCTACATCTTACTCCGCTGGTCTCAACTATTCCAGCTATGACTCTAGCGGTTACACATCTACACCTTCGTACTATCAGCCGGCTCAGTGTGCTCCGCCGCAGGCCCAGCCCCAGCCGCCTCTGCAGCCGCCGCAGCAACAGCCACAACCACAACCGCCACCGCCGCAGCAAACCCAGCAGCCGCCCAAACAGCTCGCCAATTCCTCCTGGAGCAACAGCGGTGGCAGCAGCGTCTCCAGTCCTGCTGTCAGCTCATACAGGAAGCCGGCTTTCCACCAGAACAAGATACAGAAGCCTAAAGGTCCACCGAAGCAACCGCAGCTGCACTACTGCGATATCTGCAAGATCAGCTGCGCCGGTCCACAGACTTATCGGGAACATCTGGAAGGGCAGAAGCACAAGAAGAAAGAGGCGGCTCAGAAGAGCGGCAGTCAGGTGACCAATGGCCCCCGTGGCGTCCAGACACAGTTGCGCTGTGAACTGTGCGACGTCTCGTGCACCGGCGCCGACGCTTACGCTGCGCACATTCGCGGATCCAAACACCAAAAGGTGGTGAAGCTGCACACCAAGCTTGGCAAACCCATCCCTTCCACGGAGCCGGTTTTAGTGAGCTCCACTCCTGCTGCAATGACGACAACCACTAGTAAACCAGCGGCGTCGACTTCTTCCACTCCTACATCAGCAGCGCAGAAGATCCAGACAGCGGCTCCACCCAAACCTGCGGCAGCACCTGTCAAAAAACCACCGCCTGCTGTTTCTGCTGCTAAAGCTCCTGCTGTTGTCAGTAAACCGTCCACATCGACTGTGGTGAAAATGGAGGAGGTGAAGCCGCCTGTGGTCAAAACAGACCCTTCCAGCGATGATGAGGATGCAGACGCTACAGGACCTCAAGGAGACATCCAGCCTGTGGGACACGATTATGTCGAAGAGGTTCGTAATGATGATGGAAAGGTGATTCGCTTTCATTGTAAACTGTGTGAATGCAGCTTCAACGATCCCAACGCTAAAGACATGCATCTGAAGGGACGCAGACACAGACTGCAATACAAAaaAAAAGTGAACCCAGACCTCCCTGTGGAGATCAAGCCGAGCAATCGTGCACGGAAACTTCTGGAGGTCAAGCTGCGCAAACAGAAGCAGAAATCTGTGCTGAAGAGACAGCAGGAGGACGAGCAGCGCTGGCACATGGAGATGAGCAGGAGGTACGAGGAGGACATGTACTGGAGGAGGATGGAGGAGGAGCAAGTATACTGGGCAGAGCCAAGGCGCAGGATGGCCCCGCCTCCTCTCATGGGCCGGCCCAGCATCCCAGTGCCCCCTCTATTGCCCGTGCGAAGGCCTGATTCACCCGATGACCGGCACATCATGGCCAAACACTCCGCCATCTACCCTGTGGAGGAGGAGCTGCAGGCGGTGCAGCGGATCGTCTCTCATTCTGAGCGCGCTCTCAAGCTGGTCTCTGATACACTGCTGGAGAAAGTGGCGTGTGCTGATGACGACGAAAGCGAGACTGACAAACAGTCGGAGACTCAGTCTCGTACTCTTAAAGGAGTGATGCGGGTGGGAATCCTGGCTAAAGGCTTGCTCCTGCGCGGAGACCGTAACGTTCAGCTAATCCTGCTAGCAGCTAACAAACCCACCGTTTCTCTTCTGAAGACTGTAGCGGAGCAACTGCCCAAACAGCTAGCTACCTTTTCTGAAGATCAGTATGAGGTGCAGGTACACCCTGAGGAAGCCAACATCGTCATTTTTTCAAGCAAGGAACCAAAAATGCAGGTCACCATCTCTCTTACCTCACCAGTGATGCGCGAAGACCCCGTCCCGAACATGGAGAAAGTGTCAGAGAAAGACCCTCCGGATCTTCTGAACAGGATCAAGTGCCTTGAGTATTTAGCGGCTCTGCGACATGCTAAATGGTTTCAGGCTCGGGCCAATGGACTTCAGTCTTGCGTCATCATTATTCGGGTTCTGCGGGATCTCTGCCAGCGCATACCAACATGGGGAAAGATGCCAAACTGGGCCATGGAGCTGATTGTGGAGAAGGCCATTAGCAGTGCGTCTGGACCGCTCAGTCCTGGAGAAGCTTTGCGGAGGGTCCTTGAATGCATCGCCACTGGCATTCTCCTGCCAGATGGTCCTGGTCTTCTCGACCCATGTGAGAAAGGTCAGACAGATGCTTTGGGAACCATGTCGAAACAGGCTCGTGAAGACGTAACCGCTAACGCACAGCATGCACTACGTCTGCTGGCTTTCCGTCAGATCCATAAAGTCCTCGGCATGGGCTCATTGCCGGTGTCCAAAGCTGCCGCTAGAAACCGCAAAAGACGACGTGACGGCAGCGACGTCGGTGAAGGAGAAGCAGACggaaaaaaggacaaaaaagatGATTCCAACGACCCCTGAGACGTCTGCGTAATCTCAGCAACCtttcaaaatgtataaatatcCCTCAAAAGAGGAAAGAAACAAAGCAACACCCAATGGTTctgttttttgaaaatgacaaGTGACGGAAATAACTTGTATTCGTTCCCCTTTTATGATGTAATACCTTTTTATTACATCTGAGATGAAAATACGCTCCCAAAATTGGACTTAGTTTTCAGCGAATCAGATGATGACGATTGAACGTCACGCTACTTTAATATAAACCGTTATTGAAAGTCACATTAGTTCTATTAGGCACTTTTACGTAATAAAGGCACTTAATTAAAAGCTTTAATCATCCTGACACAGGCCAGTCTCTTATGTTTACATAAGCatttcatttcaaaatatatatatatgaggtggGGCCCAAAAGTCTGAGAGCAGagattatttttttagttaaaaacATACGTTTTATGATTTAAATTAATGTGAAATGCATATTATAGAATTATATTTCAGATTCTGCACATTTAAAACAAAGTGAAGGTGatgttaaatatgtaaaacagACTTAAAAACACATCCGAATAAAAGTCAACGTCTCAGACTCTTGAATCCCGTCTAAATCGGTTTTAtgtgataatattattataacgAGTTCTATAATAATATTATGGTGATTTCATGCAAATAAATTAGTTTCTCTCTATACTGTgtatcttaaaatggttttaaaaatgcgTAGTTCCTAGTATTCACTAATAATAAGCTGTTAAAAGTCACGATTCAGCTTTGTGTGGTCGTCTATTAACCCCCGACACTGGATTTCTACACGTTTAGCGCAAAACACAGACATCTCCGCTATCATTATTTTGAATTGCATACTGAATAATCGATCATTTCACGGCAAGAAGCTGGCGTTTCGACAGGGTATCGAGAAGTCGTTCTTCGGCGAACGACGACAacgttaaaaaaatatatataaaaaataagtctGTGGTTCTTCACACGTGCCTGCGGTAAAGATTTAAAGTACTTGAAATGTGAATGACGAGGCGAAGAAGTGCGGTtcttcatattgcaatataatataatgtaatacctCTCTCTAttcttacatttttatataaatcttGATGTGAGATGCGCAGAAAGTTTGCTGTTAGTATGTTGATTCTTCATATCGCTTGGATTTGCGTTTCCGCACACCCGTTTTTACGTACAATGCGACGGTTTCCCGCCATTTTTAGATGTTCCTGCTGAGTgtttgttgactttttttttgtaggaCTGTGAATAATTCTAGCGTGATCCTTCATTTGGAATATCTGTGTAGTGCTGCATAACGAAATAAACAGAGAAACACGG
>TCONS_00040969
TGCTGCTGCTGAAGTTTCTATGATGGCGGCCAGTAATTATTATGGATTCACACATGCAGCTGCAGCTGCCGCCGGCCCGCAGTACAgCACTCAGCCGCCTCCTGCCTATTCCCACCCAACCACGGGCAGCTATAATGTCCAGCCTGCACCCGGAGTGGCTCATGCTGTGACGGCATCATACCCTGCACCCACTGCCCAGCCGGCACGTCCTGCAGTAACAGCACCATACCCCACCTACCAGCCCCATCCGGCCCCAAATTATGGCTACCGCCAGCCTGAGACGACCCCGCAGCCCACCACCACTCCTCAAACATACCAGGTGTTGACTGAACcgGAGAATTATACATATGGGCGACCACCGCCTGTCAGCAGTTATGAGAACAAGCAGTACTTTCAAACCAGCATCGCACCAGCGCAACGACCTGCGACAGAGGCCTACTTCCAGACAGGTCTAAAAAGTGGCTACAGCCCGGCAAGCACAGCGTACAACCAGCCGCCGGTTCAAAGACAGGTGGCAGCCCTGAAACCTCCGCCCGCTGTGAGCTCCGTATCTTCCAGCTACACCATCTACCCCACATCCACCAGCGTTCAGCAAAGCCCAGCGCCCAGCTCCTCTTTCAACTCCACAGCTGCTACATCTTACTCCGGTACGCCACAAACACTTTACCCACTGGTCTCAACTATTCCAGCTATGACTCTAGCGGTTACACATCTACACCTTCGTACTATCAGCCGGCTCAGTGTGCTCCGCCGCAGGCCCAGCCCCAGCCGCCTCTGCAGCCGCCGCAGCAACAGCCACAACCACAACCGCCACCGCCGCAGCAAACCCAGCAGCCGCCCAAACAGCTCGCCAATTCCTCCTGGAGCAACAGCGGTGGCAGCAGCGTCTCCAGTCCTGCTGTCAGCTCATACAGGAAGCCGGCTTTCCACCAGAACAAGATACAGAAGCCTAAAGGTCCACCGAAGCAACCGCAGCTGCACTACTGCGATATCTGCAAGATCAGCTGCGCCGGTCCACAGACTTATCGGGAACATCTGGAAGGGCAGAAGCACAAGAAGAAAGAGGCGGCTCAGAAGAGCGGCAGTCAGGTGACCAATGGCCCCCGTGGCGTCCAGACACAGTTGCGCTGTGAACTGTGCGACGTCTCGTGCACCGGCGCCGACGCTTACGCTGCGCACATTCGCGGATCCAAACACCAAAAGGTGGTGAAGCTGCACACCAAGCTTGGCAAACCCATCCCTTCCACGGAGCCGGTTTTAGTGAGCTCCACTCCTGCTGCAATGACGACAACCACTAGTAAACCAGCGGCGTCGACTTCTTCCACTCCTACATCAGCAGCGCAGAAGATCCAGACAGCGGCTCCACCCAAACCTGCGGCAGCACCTGTCAAAAAACCACCGCCTGCTGTTTCTGCTGCTAAAGCTCCTGCTGTTGTCAGTAAACCGTCCACATCGACTGTGGTGAAAATGGAGGAGGTGAAGCCGCCTGTGGTCAAAACAGACCCTTCCAGCGATGATGAGGATGCAGACGCTACAGGACCTCAAGGAGACATCCAGCCTGTGGGACACGATTATGTCGAAGAGGTTCGTAATGATGATGGAAAGGTGATTCGCTTTCATTGTAAACTGTGTGAATGCAGCTTCAACGATCCCAACGCTAAAGACATGCATCTGAAGGGACGCAGACACAGACTGCAATACAAAaaAAAAGTGAACCCAGACCTCCCTGTGGAGATCAAGCCGAGCAATCGTGCACGGAAACTTCTGGAGGTCAAGCTGCGCAAACAGAAGCAGAAATCTGTGCTGAAGAGACAGCAGGAGGACGAGCAGCGCTGGCACATGGAGATGAGCAGGAGGTACGAGGAGGACATGTACTGGAGGAGGATGGAGGAGGAGCAAGTATACTGGGCAGAGCCAAGGCGCAGGATGGCCCCGCCTCCTCTCATGGGCCGGCCCAGCATCCCAGTGCCCCCTCTATTGCCCGTGCGAAGGCCTGATTCACCCGATGACCGGCACATCATGGCCAAACACTCCGCCATCTACCCTGTGGAGGAGGAGCTGCAGGCGGTGCAGCGGATCGTCTCTCATTCTGAGCGCGCTCTCAAGCTGGTCTCTGATACACTGCTGGAGAAAGTGGCGTGTGCTGATGACGACGAAAGCGAGACTGACAAACAGTCGGAGACTCAGTCTCGTACTCTTAAAGGAGTGATGCGGGTGGGAATCCTGGCTAAAGGCTTGCTCCTGCGCGGAGACCGTAACGTTCAGCTAATCCTGCTAGCAGCTAACAAACCCACCGTTTCTCTTCTGAAGACTGTAGCGGAGCAACTGCCCAAACAGCTAGCTACCTTTTCTGAAGATCAGTATGAGGTGCAGGTACACCCTGAGGAAGCCAACATCGTCATTTTTTCAAGCAAGGAACCAAAAATGCAGGTCACCATCTCTCTTACCTCACCAGTGATGCGCGAAGACCCCGTCCCGAACATGGAGAAAGTGTCAGAGAAAGACCCTCCGGATCTTCTGAACAGGATCAAGTGCCTTGAGTATTTAGCGGCTCTGCGACATGCTAAATGGTTTCAGGCTCGGGCCAATGGACTTCAGTCTTGCGTCATCATTATTCGGGTTCTGCGGGATCTCTGCCAGCGCATACCAACATGGGGAAAGATGCCAAACTGGGCCATGGAGCTGATTGTGGAGAAGGCCATTAGCAGTGCGTCTGGACCGCTCAGTCCTGGAGAAGCTTTGCGGAGGGTCCTTGAATGCATCGCCACTGGCATTCTCCTGCCAGATGGTCCTGGTCTTCTCGACCCATGTGAGAAAGGTCAGACAGATGCTTTGGGAACCATGTCGAAACAGGCTCGTGAAGACGTAACCGCTAACGCACAGCATGCACTACGTCTGCTGGCTTTCCGTCAGATCCATAAAGTCCTCGGCATGGGCTCATTGCCGGTGTCCAAAGCTGCCGCTAGAAACCGCAAAAGACGACGTGACGGCAGCGACGTCGGTGAAGGAGAAGCAGACggaaaaaaggacaaaaaagatGATTCCAACGACCCCTGAGACGTCTGCGTAATCTCAGCAACCtttcaaaatgtataaatatcCCTCAAAAGAGGAAAGAAACAAAGCAACACCCAATGGTTctgttttttgaaaatgacaaGTGACGGAAATAACTTGTATTCGTTCCCCTTTTATGATGTAATACCTTTTTATTACATCTGAGATGAAAATACGCTCCCAAAATTGGACTTAGTTTTCAGCGAATCAGATGATGACGATTGAACGTCACGCTACTTTAATATAAACCGTTATTGAAAGTCACATTAGTTCTATTAGGCACTTTTACGTAATAAAGGCACTTAATTAAAAGCTTTAATCATCCTGACACAGGCCAGTCTCTTATGTTTACATAAGCatttcatttcaaaatatatatatatgaggtggGGCCCAAAAGTCTGAGAGCAGagattatttttttagttaaaaacATACGTTTTATGATTTAAATTAATGTGAAATGCATATTATAGAATTATATTTCAGATTCTGCACATTTAAAACAAAGTGAAGGTGatgttaaatatgtaaaacagACTTAAAAACACATCCGAATAAAAGTCAACGTCTCAGACTCTTGAATCCCGTCTAAATCGGTTTTAtgtgataatattattataacgAGTTCTATAATAATATTATGGTGATTTCATGCAAATAAATTAGTTTCTCTCTATACTGTgtatcttaaaatggttttaaaaatgcgTAGTTCCTAGTATTCACTAATAATAAGCTGTTAAAAGTCACGATTCAGCTTTGTGTGGTCGTCTATTAACCCCCGACACTGGATTTCTACACGTTTAGCGCAAAACACAGACATCTCCGCTATCATTATTTTGAATTGCATACTGAATAATCGATCATTTCACGGCAAGAAGCTGGCGTTTCGACAGGGTATCGAGAAGTCGTTCTTCGGCGAACGACGACAacgttaaaaaaatatatataaaaaataagtctGTGGTTCTTCACACGTGCCTGCGGTAAAGATTTAAAGTACTTGAAATGTGAATGACGAGGCGAAGAAGTGCGGTtcttcatattgcaatataatataatgtaatacctCTCTCTAttcttacatttttatataaatcttGATGTGAGATGCGCAGAAAGTTTGCTGTTAGTATGTTGATTCTTCATATCGCTTGGATTTGCGTTTCCGCACACCCGTTTTTACGTACAATGCGACGGTTTCCCGCCATTTTTAGATGTTCCTGCTGAGTgtttgttgactttttttttgtaggaCTGTGAATAATTCTAGCGTGATCCTTCATTTGGAATATCTGTGTAGTGCTGCATAACGAAATAAACAGAGAAACAC
>TCONS_00040970
gctgaaatatctgctctccgttaaacagaaataggaaaagaaataaacaagagggctaataagtctgacttcaaatgtatactCAATCCTGTTTATCAAACAACCAAAAAACCAAAGCGGTTTTATGTTTGGGTTTGTTAATCGCTCGCCCCCTTGGCTGTATCAACAGACCCAAGCAAATAATATTTTCCATCCGCATCTTTTGCTTAACGTTGCAAGTTTTTTTAGGAACCTGGACGTGTCGGAAAGCCCCTCTTCTTGTGACATTGCGGTGTTGTCACTTTGTTTTGACGTGTGTTGTAATGATCACATGTAATTAACAGTCTAGTGCCGCAAATCCCCTAAAAAAAAGTCTCATTTACTCCCTAAAAACTTTATATATCTGCAAAAGTACCTTTTTCTTTGTGCTTATTAAAGCATTGCATAATATTGATGGTGTTTCCCCACATGTGTTCCTGTAGTGTCAGAGAAAGACCCTCCGGATCTTCTGAACAGGATCAAGTGCCTTGAGTATTTAGCGGCTCTGCGACATGCTAAATGGTTTCAGGCTCGGGCCAATGGACTTCAGTCTTGCGTCATCATTATTCGGGTTCTGCGGGATCTCTGCCAGCGCATACCAACATGGGGAAAGATGCCAAACTGGGCCATGGAGCTGATTGTGGAGAAGGCCATTAGCAGTGCGTCTGGACCGCTCAGTCCTGGAGAAGCTTTGCGGAGGGTCCTTGAATGCATCGCCACTGGCATTCTCCTGCCAG

Function

symbol description
zfr2 Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Orthologous to human ZFR2 (zinc finger RNA binding protein 2).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003725 double-stranded RNA binding molecular_function
GO:0003727 single-stranded RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-184 Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Orthologous to human ZFR2 (zinc finger RNA binding protein 2).

Ensembl:

ensembl_id ENSDARG00000071683

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040968 False 4372 mRNA 0.49 19 5056288 5099824
TCONS_00040969 False 4393 mRNA 0.49 19 5056290 5099824
TCONS_00040970 True 755 lncRNA 0.44 3 5059885 5062921

Neighbor

gene id symbol gene type direction distance location
XLOC_020774 matk coding downstream 1515 5036179 ~ 5054773 (-)
XLOC_020773 rx1 coding downstream 49487 4997784 ~ 5006801 (-)
XLOC_020772 cherp coding downstream 66243 4962370 ~ 4990045 (-)
XLOC_020771 pku300 coding downstream 111493 4939559 ~ 4944795 (-)
XLOC_020770 si:ch73-256j6.2 coding downstream 125225 4926777 ~ 4931063 (-)
XLOC_020776 CR936300.2 coding upstream 24090 5123914 ~ 5163133 (-)
XLOC_020777 CR936300.1 coding upstream 40706 5140530 ~ 5145022 (-)
XLOC_020778 tnfaip8l1 coding upstream 53637 5153461 ~ 5171829 (-)
XLOC_020779 ncln coding upstream 133572 5233396 ~ 5252012 (-)
XLOC_020780 NA coding upstream 167699 5267523 ~ 5274962 (-)
XLOC_020765 NA non-coding downstream 202473 4853062 ~ 4853815 (-)
XLOC_020756 NA non-coding downstream 320951 4733007 ~ 4735337 (-)
XLOC_020752 CU074310.1 non-coding downstream 743170 4311803 ~ 4313118 (-)
XLOC_020750 NA non-coding downstream 1169604 3883607 ~ 3886684 (-)
XLOC_020749 NA non-coding downstream 1315004 3740586 ~ 3741284 (-)
XLOC_020781 NA non-coding upstream 213147 5312971 ~ 5315589 (-)
XLOC_020784 NA non-coding upstream 353419 5453243 ~ 5463115 (-)
XLOC_020788 NA non-coding upstream 524549 5624373 ~ 5631081 (-)

Expression


Co-expression Network