XLOC_020770 (si:ch73-256j6.2)


Basic Information

Item Value
gene id XLOC_020770
gene name si:ch73-256j6.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4926777 ~ 4931063 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040957
GTGACGGTGGGAGATTCAGTAACTCTGAGCTCTAATCTCACAGAAATAAAGGATGAGGATCAGATTCAGTGGCGGTTTGGATATGAAGACAATAATGCAATCGCAGAAATCAACGTAACGGCTAACAGATTCTCTGTGTTTGATGATGTTCTTGAtgggagattcagagacagactgaaactggacaacaaaactggatctctgaccatcacaaacATCAGAAATAAACATGCGTTGATATTTGTTCTCTTTGTGTCTTGTGATGAAGATGAAATGGAAATGACAATGGGAGATTCAGTCACTCTAAAATCTGGTTTTACTGTACTGAAAAATGACAATGGGATTCAGTGGAGGTTTAAGGACACTTTAATTGCAGAAATCAATGTAACCGCAAACAGATTCTCTGTATTTGATGATGTTCTTGATAGaagattcagagacagactgaaacTGGACAAGAAAAcgggatctctgaccatcacatACATCACATCTGAACATGCTGGAGTTTATAAACTACAGACCAACAGCGAAATCAACACTGTTCATCTTATTGTTGTTGGAGAGAAAAAAGTGTTTGTGAAAACAGAGTTTTCGGTCACTCTGAACTCCGGTTTTACTCAAATGATGGATGATGATGAGGTTCAGTGGTTGTTTTCTAATGAAAACTTTCCAATAGCTGAAAGCATTAACAGGGACAGTGACGTCGTTATATTTGATGATGTTCTTGATAGGAGATTCAGAGACAGCCTGAAACTGGACAAcaaaactggatctctgaccatcacaaacACCACTGTTGAGCATGCTGGGAAATACCTACTTAAGACCAGCCATCTTTTTATTACTTTCCGTCTGACTGTCTATGGCTCTGTTCACTGCTGTGGTCCTACTGAAGCTGCGATCCGATTGGTCCTCTCTGTTCTGGTGGGCGTGGCTACTGTCAttattgtgctttatgacatcagATCCAGAAGAGCTGAACAAGATCAAGCACATATTCACGCATCACAAACCTGA

Function

symbol description
si:ch73-256j6.2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-223 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000071653

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040957 True 1020 mRNA 0.40 4 4926777 4931063

Neighbor

gene id symbol gene type direction distance location
XLOC_020769 si:ch73-256j6.3 coding downstream 13746 4908913 ~ 4913031 (-)
XLOC_020764 si:ch73-256j6.4 coding downstream 27483 4819410 ~ 4899294 (-)
XLOC_020768 si:ch73-256j6.4 coding downstream 33840 4884980 ~ 4892937 (-)
XLOC_020767 si:ch73-256j6.6 coding downstream 54359 4868448 ~ 4872418 (-)
XLOC_020760 si:ch73-256j6.5 coding downstream 58456 4772860 ~ 4868321 (-)
XLOC_020771 pku300 coding upstream 8496 4939559 ~ 4944795 (-)
XLOC_020772 cherp coding upstream 31307 4962370 ~ 4990045 (-)
XLOC_020773 rx1 coding upstream 66721 4997784 ~ 5006801 (-)
XLOC_020774 matk coding upstream 105116 5036179 ~ 5054773 (-)
XLOC_020775 zfr2 coding upstream 125225 5056288 ~ 5099824 (-)
XLOC_020765 NA non-coding downstream 72962 4853062 ~ 4853815 (-)
XLOC_020756 NA non-coding downstream 191440 4733007 ~ 4735337 (-)
XLOC_020752 CU074310.1 non-coding downstream 613659 4311803 ~ 4313118 (-)
XLOC_020750 NA non-coding downstream 1040093 3883607 ~ 3886684 (-)
XLOC_020749 NA non-coding downstream 1185493 3740586 ~ 3741284 (-)
XLOC_020777 CR936300.1 non-coding upstream 209467 5140530 ~ 5145022 (-)
XLOC_020780 NA non-coding upstream 336460 5267523 ~ 5274962 (-)
XLOC_020781 NA non-coding upstream 381908 5312971 ~ 5315589 (-)
XLOC_020784 NA non-coding upstream 522180 5453243 ~ 5463115 (-)
XLOC_020788 NA non-coding upstream 693310 5624373 ~ 5631081 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_10886966_10901232 NA coding CI01000030 null 10886594 ~ 10904464 (-)