XLOC_020768 (si:ch73-256j6.4)


Basic Information

Item Value
gene id XLOC_020768
gene name si:ch73-256j6.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4884980 ~ 4892937 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040953
aCAATAAATGATCACAGCTTTCAGTTTAAGTCTAAGTATGTGAATGTTGATGTTTGTTCTCATTGTTTgtttgatgatgaagatgaaatagAAGTGGAGGAGGAAGATTCAGTCACTCTGAGCTCTGGTGTCTCTAAACTGAAGAATGATGATCAGATTCAGTGGAGGTTTGGAGATGGAGACACTTTAATAGCAGAAATCAATAAACAGACCAACAGTTTCTCTGTATTTGATGATGTTCTTGAtgggagattcagagacagactgaaactggacaagaaaactggatctctgaccatcacaaacACCACAACTGAACATGCTGGAGTTTATAAAGTACAGACCAACACTGAAATCAACACTGTTAGACTGAGagttttggGAAATAGAAAACAAGTGTCTGTGAAAATGAGAAAATCAGTCACTCTGAGCTCTGGTGTCTCTGAACTGAAAAATGATGATCAGATTCAGTGGAGGTTTGGAGATAAAGACACTTTAATAGCAGAAATAAATGTAACGGCAAACAGATTCTCTGTATTTGATGATGTTCTTGAtgggagattcagagacagactgaaactggacaataaaactggatctctgaccattaCAGACATCAGAACTAGAGATGCTGGAGATTATAAACTACACAGCaactttattgatattattttccATCTCATTGTCTGTGGTGAGTTACAAATGTTCTTCatctgtttcatttttttaatcaccaGATGTAATTTTAATCCACACATCTTTgctattttgtgtatttttgctattgtatattaaaattaactttcagaAACAACAATAGAGCTTTAATGATCTTAATCTGGCAAAAACcctgtttctgtttgtgtgtttgatgaTGAAGACGAAATATCAGTGAAGGAGGGAGATTCAGTCACTCTAAACTCTGAACTCACTGAACTGAAGGATGATGATTGGATTCTGTGGACGTTTGGAAATGAAAACACTTTAATCGCTGGAATTAAAAACCAAAACATTGTATTTTCTGTGTTTGGTGGTGTTCCTGATGagagattcagagacagactgaaactggacgataaaactggatctctgaccatcacagaCACCAGAACTGAACATGCTGGAGTTTATAAATTATCTATCAACTATAAGAAAAAACAGAGTTTCATTCTCACTGTCGGTGAGTTTAATATTGTTTTCTCAGGTTTTATTTATTCAGAAACAGATCTACACTAATgtctgatcatttaaatgttgttttctgTCTTCTTCAGTCTCTTGATTTCTCCTCATTTCTCTTTATTCTCTGGTGTTTTCAGCTCTGCCTGTTCCTGTCCTCATCCTCAACTCTTCTCAATGTtcttcatcctcatcttcatcagtGCAGTATTGTTCAGTGctgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggacaacaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACTCAACATCTGGACATCAGTCAACTCTGTCCCACATGTTCAGGTACAGCAGAGCTGATATTAGTGGATGGCAGTGCTGATATGAAGCTTTATCGACTGATCTGAGCTCAGTTTAATGTGTTTGTTCCTCAGGCTCTGTTCACTGCTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGTTCTGGTGGGCGTGGCTACTGTCAttattgtgctttatgacatcagATCCAGAAGAGCTGAACAAGATCAAGCACATATTCACGCATCACAAACCTGAATGATGATGTCAGAGAACTGCTTTCAGTCATTTCAGCTTCATTTATTTTGAAGATTTTAGATGAACCTGATGGTTCTGATGCAGCTCATGTGAGGGTTTGACATAAATACAGCAGCAGACTTCAAATACAAAGCTTTGCTTTCATTTAGATCAGTACAACAGGCTTTACTAATGAACATTTTATATATGATTtaatttttcatgtttgttttgtaGTGTTACTATTTTACAGATTcagtttgatttattgtttatatttctcTAAAATAAGACACAGATCTTACTTCACTGTGCATTTGTCAGATGTATTTGCTTGTCTTCATCAATAAAGTTTTCTCTGTCTAAATGTAAAGTCTCTTCATGTTGTATTTGATTGTGTCGAG
>TCONS_00040954
CTGCCATCTTGAGCTCTTCAGTGAACTGATGAAGAAAATGTTTCTCAAGTTAGTTTTGCTCTGTTTGTGTCGTCCGGTTGGTGGAGTTTATGATTATTATCAAGTGCAGGAGGGAAAATCAGTCACTCTGAGCTCTGAACTCACTGAACTGAAGAATGATGAGCAGATTGAGTGGTGGATTATAGACACTTTAATAGCAGAAATCAATGTAACAGCAAACAGATTCTCTGTATTTGATGATGTTCTTGAtgggagattcagagacagactgaaacTGGACAAGAAAACTGGATCTCTGATCATCACAGACGCCAGAACTGAACATACTGGAAATTATGAACTAATGATCAACCAGATGAGCAGGATTTTCAGTCTTGTAGTCTCTTatgaaatagAAGTGGAGGAGGAAGATTCAGTCACTCTGAGCTCTGGTGTCTCTAAACTGAAGAATGATGATCAGATTCAGTGGAGGTTTGGAGATGGAGACACTTTAATAGCAGAAATCAATAAACAGACCAACAGTTTCTCTGTATTTGATGATGTTCTTGAtgggagattcagagacagactgaaactggacaagaaaactggatctctgaccatcacaaacACCACAACTGAACATGCTGGAGTTTATAAAGTACAGACCAACACTGAAATCAACACTGTTAGACTGAGagttttggGAAATAGAAAACAAGTGTCTGTGAAAATGAGAAAATCAGTCACTCTGAGCTCTGGTGTCTCTGAACTGAAAAATGATGATCAGATTCAGTGGAGGTTTGGAGATAAAGACACTTTAATAGCAGAAATAAATGTAACGGCAAACAGATTCTCTGTATTTGATGATGTTCTTGAtgggagattcagagacagactgaaactggacaataaaactggatctctgaccattaCAGACATCAGAACTAGAGATGCTGGAGATTATAAACTACACAGCaactttattgatattattttccATCTCATTGTCTGTGACGAAATATCAGTGAAGGAGGGAGATTCAGTCACTCTAAACTCTGAACTCACTGAACTGAAGGATGATGATTGGATTCTGTGGACGTTTGGAAATGAAAACACTTTAATCGCTGGAATTAAAAACCAAAACATTGTATTTTCTGTGTTTGGTGGTGTTCCTGATGagagattcagagacagactgaaactggacgataaaactggatctctgaccatcacagaCACCAGAACTGAACATGCTGGAGTTTATAAATTATCTATCAACTATAAGAAAAAACAGAGTTTCATTCTCACTGTCGCTCTGCCTGTTCCTGTCCTCATCCTCAACTCTTCTCAATGTtcttcatcctcatcttcatcagtGCAGTATTGTTCAGTGctgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggacaacaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACTCAACATCTGGACATCAGTCAACTCTGTCCCACATGTTCAGGCTCTGTTCACTGCTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGTTCTGGTGGGCGTGGCTACTGTCAttattgtgctttatgacatcagATCCAGAAGAGCTGAACAAGATCAAGCACATATTCACGCATCACAAACCTGAATGATGATGTCAGAGAACTGCTTTCAGTCATTTCAGCTTCATTTATTTTGAAGATTTTAGATGAACCTGATGGTTCTGATGCAGCTCATGTGAGGGTTTGACATAAATACAGCAGCAGACTTCAAATACAAAGCTTTGCTTTCATTTAGATCAGTACAACAGGCTTTACTAATGAACATTTTATATATGATTtaatttttcatgtttgttttgtaGTGTTACTATTTTACAGATTcagtttgatttattgtttatatttctcTAAAATAAGACACAGATCTTACTTCACTGTGCATTTGTCAGATGTATTTGCTTGTCTTCATCAATAAAGTTTTCTCTGTCTAAA

Function

symbol description
si:ch73-256j6.4 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3779 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000078519

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040953 False 2240 mRNA 0.37 2 4884980 4887401
TCONS_00040954 True 2090 mRNA 0.39 7 4885017 4892937

Neighbor

gene id symbol gene type direction distance location
XLOC_020767 si:ch73-256j6.6 coding downstream 12562 4868448 ~ 4872418 (-)
XLOC_020760 si:ch73-256j6.5 coding downstream 16659 4772860 ~ 4868321 (-)
XLOC_020766 CU207311.2 coding downstream 20944 4862637 ~ 4864036 (-)
XLOC_020765 NA coding downstream 31165 4853062 ~ 4853815 (-)
XLOC_020761 CU570881.2 coding downstream 71635 4782287 ~ 4813345 (-)
XLOC_020769 si:ch73-256j6.3 coding upstream 15976 4908913 ~ 4913031 (-)
XLOC_020770 si:ch73-256j6.2 coding upstream 33840 4926777 ~ 4931063 (-)
XLOC_020771 pku300 coding upstream 46622 4939559 ~ 4944795 (-)
XLOC_020772 cherp coding upstream 69433 4962370 ~ 4990045 (-)
XLOC_020773 rx1 coding upstream 104847 4997784 ~ 5006801 (-)
XLOC_020756 NA non-coding downstream 149643 4733007 ~ 4735337 (-)
XLOC_020752 CU074310.1 non-coding downstream 571862 4311803 ~ 4313118 (-)
XLOC_020750 NA non-coding downstream 998296 3883607 ~ 3886684 (-)
XLOC_020749 NA non-coding downstream 1143696 3740586 ~ 3741284 (-)
XLOC_020777 CR936300.1 non-coding upstream 247593 5140530 ~ 5145022 (-)
XLOC_020780 NA non-coding upstream 374586 5267523 ~ 5274962 (-)
XLOC_020781 NA non-coding upstream 420034 5312971 ~ 5315589 (-)
XLOC_020784 NA non-coding upstream 560306 5453243 ~ 5463115 (-)
XLOC_020788 NA non-coding upstream 731436 5624373 ~ 5631081 (-)

Expression


Co-expression Network