RNA id: TCONS_00040954


Basic Information

Item Value
RNA id TCONS_00040954
length 2090
RNA type mRNA
GC content 0.39
exon number 7
gene id XLOC_020768
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4884980 ~ 4892937 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCCATCTTGAGCTCTTCAGTGAACTGATGAAGAAAATGTTTCTCAAGTTAGTTTTGCTCTGTTTGTGTCGTCCGGTTGGTGGAGTTTATGATTATTATCAAGTGCAGGAGGGAAAATCAGTCACTCTGAGCTCTGAACTCACTGAACTGAAGAATGATGAGCAGATTGAGTGGTGGATTATAGACACTTTAATAGCAGAAATCAATGTAACAGCAAACAGATTCTCTGTATTTGATGATGTTCTTGAtgggagattcagagacagactgaaacTGGACAAGAAAACTGGATCTCTGATCATCACAGACGCCAGAACTGAACATACTGGAAATTATGAACTAATGATCAACCAGATGAGCAGGATTTTCAGTCTTGTAGTCTCTTatgaaatagAAGTGGAGGAGGAAGATTCAGTCACTCTGAGCTCTGGTGTCTCTAAACTGAAGAATGATGATCAGATTCAGTGGAGGTTTGGAGATGGAGACACTTTAATAGCAGAAATCAATAAACAGACCAACAGTTTCTCTGTATTTGATGATGTTCTTGAtgggagattcagagacagactgaaactggacaagaaaactggatctctgaccatcacaaacACCACAACTGAACATGCTGGAGTTTATAAAGTACAGACCAACACTGAAATCAACACTGTTAGACTGAGagttttggGAAATAGAAAACAAGTGTCTGTGAAAATGAGAAAATCAGTCACTCTGAGCTCTGGTGTCTCTGAACTGAAAAATGATGATCAGATTCAGTGGAGGTTTGGAGATAAAGACACTTTAATAGCAGAAATAAATGTAACGGCAAACAGATTCTCTGTATTTGATGATGTTCTTGAtgggagattcagagacagactgaaactggacaataaaactggatctctgaccattaCAGACATCAGAACTAGAGATGCTGGAGATTATAAACTACACAGCaactttattgatattattttccATCTCATTGTCTGTGACGAAATATCAGTGAAGGAGGGAGATTCAGTCACTCTAAACTCTGAACTCACTGAACTGAAGGATGATGATTGGATTCTGTGGACGTTTGGAAATGAAAACACTTTAATCGCTGGAATTAAAAACCAAAACATTGTATTTTCTGTGTTTGGTGGTGTTCCTGATGagagattcagagacagactgaaactggacgataaaactggatctctgaccatcacagaCACCAGAACTGAACATGCTGGAGTTTATAAATTATCTATCAACTATAAGAAAAAACAGAGTTTCATTCTCACTGTCGCTCTGCCTGTTCCTGTCCTCATCCTCAACTCTTCTCAATGTtcttcatcctcatcttcatcagtGCAGTATTGTTCAGTGctgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggacaacaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACTCAACATCTGGACATCAGTCAACTCTGTCCCACATGTTCAGGCTCTGTTCACTGCTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGTTCTGGTGGGCGTGGCTACTGTCAttattgtgctttatgacatcagATCCAGAAGAGCTGAACAAGATCAAGCACATATTCACGCATCACAAACCTGAATGATGATGTCAGAGAACTGCTTTCAGTCATTTCAGCTTCATTTATTTTGAAGATTTTAGATGAACCTGATGGTTCTGATGCAGCTCATGTGAGGGTTTGACATAAATACAGCAGCAGACTTCAAATACAAAGCTTTGCTTTCATTTAGATCAGTACAACAGGCTTTACTAATGAACATTTTATATATGATTtaatttttcatgtttgttttgtaGTGTTACTATTTTACAGATTcagtttgatttattgtttatatttctcTAAAATAAGACACAGATCTTACTTCACTGTGCATTTGTCAGATGTATTTGCTTGTCTTCATCAATAAAGTTTTCTCTGTCTAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3779 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000147002

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042305 lncRNA downstream 7271 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00042304 lncRNA downstream 31202 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042303 lncRNA downstream 64871 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042302 lncRNA downstream 101993 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042301 lncRNA downstream 138575 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00040965 lncRNA upstream 112399 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00040970 lncRNA upstream 166948 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040972 lncRNA upstream 247593 5140530 ~ 5145022 (-) True XLOC_020777
TCONS_00042306 lncRNA upstream 374586 5267523 ~ 5274962 (-) True XLOC_020780
TCONS_00042307 lncRNA upstream 420034 5312971 ~ 5315485 (-) False XLOC_020781
TCONS_00040952 mRNA downstream 4414 4876634 ~ 4880603 (-) False XLOC_020764
TCONS_00040946 mRNA downstream 7005 4819410 ~ 4878012 (-) False XLOC_020764
TCONS_00040956 mRNA upstream 15976 4908913 ~ 4913031 (-) True XLOC_020769
TCONS_00040957 mRNA upstream 33840 4926777 ~ 4931063 (-) True XLOC_020770
TCONS_00040958 mRNA upstream 46622 4939559 ~ 4944795 (-) True XLOC_020771
TCONS_00040959 mRNA upstream 69433 4962370 ~ 4989917 (-) False XLOC_020772
TCONS_00040960 mRNA upstream 69562 4962499 ~ 4989803 (-) False XLOC_020772
TCONS_00040930 other downstream 571899 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1204292 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3654995 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3725268 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 4067610 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040955 other upstream 5649 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 817066 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 852366 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 853268 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 854664 5747601 ~ 5749450 (-) True XLOC_020795

Expression Profile

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