RNA id: TCONS_00042305


Basic Information

Item Value
RNA id TCONS_00042305
length 643
lncRNA type sense_over
GC content 0.41
exon number 1
gene id XLOC_020764
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4819410 ~ 4899294 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctctgaccatcacaaacACCAGAACTGAACATGCTGGAGTTTATAAATTATCTATCAACTATAAGAAAATACAAAGTTTCATTCTCACTGTCGGTGAGTTTAATATTGGTTTCACAGGTTATATTTATTCAGAAACAGATCTACACTAATgtctgatcatttaaatgttgttttctgTCTACTTCGGTCTCTTGATTTCTCCTCATTTCTCTTTATTCTCTGGTGTTTTCAGCTCTGCCTGTTCCTGTCCTCATCCTCAACTCTTCTCAATGTCcttcatcctcatcttcatcagtGCAGTATTGTTCAGTGCTGTGTTCAGTGGTAAATGTGAgcgctgtgagtctctcctggtacaaaggaaacagttttttgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggagaaaaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACTCAACATCTGGACATCAGTCAACTCTGTCCCACATGTTCAGGTACAGCAGAGCTGATATTAGTGGATGGCAGTGCTGATATGAAGCTTTATTGACTGATCTGAGCTCAGTTTGATGTGTTTGTTCCTCAGGCTCTGTTCATTGCTGTGGTCCTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042304 lncRNA downstream 23289 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042303 lncRNA downstream 56958 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042302 lncRNA downstream 94080 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042301 lncRNA downstream 130662 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042300 lncRNA downstream 141767 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00040965 lncRNA upstream 127590 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00040970 lncRNA upstream 182139 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040972 lncRNA upstream 262784 5140530 ~ 5145022 (-) True XLOC_020777
TCONS_00042306 lncRNA upstream 389777 5267523 ~ 5274962 (-) True XLOC_020780
TCONS_00042307 lncRNA upstream 435225 5312971 ~ 5315485 (-) False XLOC_020781
TCONS_00040951 mRNA downstream 4686 4868448 ~ 4872418 (-) True XLOC_020767
TCONS_00040941 mRNA downstream 8783 4776460 ~ 4868321 (-) True XLOC_020760
TCONS_00040950 mRNA downstream 13068 4862637 ~ 4864036 (-) True XLOC_020766
TCONS_00040942 mRNA downstream 63759 4782287 ~ 4813345 (-) False XLOC_020761
TCONS_00040945 mRNA downstream 64349 4799418 ~ 4812755 (-) True XLOC_020761
TCONS_00040953 mRNA upstream 7234 4884980 ~ 4887401 (-) False XLOC_020768
TCONS_00040954 mRNA upstream 7271 4885017 ~ 4892937 (-) True XLOC_020768
TCONS_00040956 mRNA upstream 31167 4908913 ~ 4913031 (-) True XLOC_020769
TCONS_00040957 mRNA upstream 49031 4926777 ~ 4931063 (-) True XLOC_020770
TCONS_00040958 mRNA upstream 61813 4939559 ~ 4944795 (-) True XLOC_020771
TCONS_00040930 other downstream 563986 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1196379 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3647082 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3717355 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 4059697 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040955 other upstream 20840 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 832257 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 867557 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 868459 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 869855 5747601 ~ 5749450 (-) True XLOC_020795

Expression Profile

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