RNA id: TCONS_00040950


Basic Information

Item Value
RNA id TCONS_00040950
length 1082
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_020766
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4862637 ~ 4864036 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGGGAGATTCAGTCACTCTAAACTCTGATCTCACTCAACTGAAGAATATTGATCGGATTCAGTGGATGTTTGGAGATAAAGACACTTTAATAGCAGAAATCAATAAACGACCCAGATACTCTGTATTTGATGATGTTCTTGTTAagagattcagagacagactgaaactggacaataaaactggatctctgaccatcacagaCACCAGAACTGAACATGCTGGAGATTATAAACTTTGGTTCAACAATGAGAGAATAAGGAGTTTCATTCTCACTGTTGCTCTGCCTGTTCCTGTCCTCATCCTCAACTCTTCTCAATGTtcttcatcctcatcttcatcagtGCAGTATTGTTCAGTGctgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggagaaaaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACTCAACATCTGGACATCAGTCAACTCTGTCCCACATGTTCAGGCTCTGTTCACTGCTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGTTCTGGTGGGCGTGGCTACTGTCAttattgtgctttatgacatcagATCCAGAAGAGCTGAACAAGATCAAGCACATATTCACGCATCACAAACCTGAATGATGATGTCAGAGAACTGCTTTCAGTCATTTCAGCTTCATTTATTTTGAAGATTTTAGATGAACCTGATGGTTCTGATGCAGCTCATGTGAGGGTTTGACATAAATACAGCAGCAGACTTCAAATACAAAGCTTTGCTTTCATTTAGTTCAGTACAACAGGCTTTACTAATGAACATTTTATATATGATTTAatttttcgtttgttttgtagTGTTACTATTTTACAGATTcagtttgatttattgtttatatttctcTAAAATAAGACACAGATCTTACTTCACTGTGCATTTGTCAGATGTATTTGCTTGTCTTCATCAATAAAGTTTTCTCTGTCTAAATGTAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136344

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042304 lncRNA downstream 8822 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042303 lncRNA downstream 42491 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042302 lncRNA downstream 79613 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042301 lncRNA downstream 116195 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042300 lncRNA downstream 127300 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042305 lncRNA upstream 13068 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00040965 lncRNA upstream 141300 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00040970 lncRNA upstream 195849 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040972 lncRNA upstream 276494 5140530 ~ 5145022 (-) True XLOC_020777
TCONS_00042306 lncRNA upstream 403487 5267523 ~ 5274962 (-) True XLOC_020780
TCONS_00040942 mRNA downstream 49292 4782287 ~ 4813345 (-) False XLOC_020761
TCONS_00040945 mRNA downstream 49882 4799418 ~ 4812755 (-) True XLOC_020761
TCONS_00040944 mRNA downstream 63899 4797508 ~ 4798738 (-) True XLOC_020763
TCONS_00040943 mRNA downstream 77979 4783644 ~ 4784658 (-) True XLOC_020762
TCONS_00040940 mRNA downstream 82627 4776460 ~ 4780010 (-) False XLOC_020760
TCONS_00040951 mRNA upstream 4412 4868448 ~ 4872418 (-) True XLOC_020767
TCONS_00040952 mRNA upstream 12598 4876634 ~ 4880603 (-) False XLOC_020764
TCONS_00040953 mRNA upstream 20944 4884980 ~ 4887401 (-) False XLOC_020768
TCONS_00040954 mRNA upstream 20981 4885017 ~ 4892937 (-) True XLOC_020768
TCONS_00040956 mRNA upstream 44877 4908913 ~ 4913031 (-) True XLOC_020769
TCONS_00040930 other downstream 549519 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1181912 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3632615 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3702888 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 4045230 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040955 other upstream 34550 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 845967 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 881267 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 882169 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 883565 5747601 ~ 5749450 (-) True XLOC_020795

Expression Profile

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