RNA id: TCONS_00042306


Basic Information

Item Value
RNA id TCONS_00042306
length 355
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_020780
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5267523 ~ 5274962 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttcatgagaatAACCGTTGCCGTAGGACTACCGATTCGCGCGCAGCCGAGCTGAGGATGATCTGGGATCATATTTGGGTGGTGTGTGCTTCAAGCCTCCTCCGCCTTTAGGAACAAGTTGACGTGGCCAATTCATCATCTCTCCCTCGACGCTCCATCATTCGCACAGGCAATCCATCAAGAGCAGACGCTGAGAGACACGGCAGAAGAGAAGAGAGCAACGCTAATCTACAGTCACCGCTCAGGGGAGTCTCTCGAGAGACGTTTCCACTTCAACTCAGTGTTGCAGCTTTAATGCAGATGTAGATGATATCTCAATTACAAACATCAGATACCCTAATAAAATATTACTCCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040972 lncRNA downstream 122501 5140530 ~ 5145022 (-) True XLOC_020777
TCONS_00040970 lncRNA downstream 204602 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040965 lncRNA downstream 260793 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00042305 lncRNA downstream 389777 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00042304 lncRNA downstream 413708 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042307 lncRNA upstream 38009 5312971 ~ 5315485 (-) False XLOC_020781
TCONS_00042308 lncRNA upstream 38009 5312971 ~ 5315544 (-) False XLOC_020781
TCONS_00042309 lncRNA upstream 38009 5312971 ~ 5315577 (-) False XLOC_020781
TCONS_00042310 lncRNA upstream 38009 5312971 ~ 5315582 (-) False XLOC_020781
TCONS_00042311 lncRNA upstream 38009 5312971 ~ 5315589 (-) True XLOC_020781
TCONS_00040976 mRNA downstream 15511 5233400 ~ 5252012 (-) True XLOC_020779
TCONS_00040975 mRNA downstream 15518 5233396 ~ 5252005 (-) False XLOC_020779
TCONS_00040973 mRNA downstream 95694 5153461 ~ 5171829 (-) False XLOC_020778
TCONS_00040974 mRNA downstream 96161 5154534 ~ 5171362 (-) True XLOC_020778
TCONS_00040971 mRNA downstream 104390 5123914 ~ 5163133 (-) True XLOC_020776
TCONS_00040977 mRNA upstream 45453 5320415 ~ 5323482 (-) True XLOC_020782
TCONS_00040978 mRNA upstream 158131 5433093 ~ 5441893 (-) True XLOC_020783
TCONS_00040979 mRNA upstream 208626 5483588 ~ 5518117 (-) True XLOC_020785
TCONS_00040980 mRNA upstream 243352 5518314 ~ 5529241 (-) True XLOC_020786
TCONS_00040981 mRNA upstream 274772 5549734 ~ 5553007 (-) True XLOC_020787
TCONS_00040947 other downstream 368229 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 368229 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 368407 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 954405 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1586798 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 435041 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 470341 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 471243 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 472639 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 596073 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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