RNA id: TCONS_00042308


Basic Information

Item Value
RNA id TCONS_00042308
length 1733
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id XLOC_020781
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5312971 ~ 5315589 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGGACGAAAAAAATCTCCATAAATCAAACACAAAGAACAGATTAGATAAAAGTGTTCCCAGCTTATTACGTTGATTTGCATGTAATGTCTCTGCGTGATATGAATTTGGCTCAGGGCGTATGATTAACAATAAATTAAGCATGTGTTTATGGTTATTCAGTTGCTACATGATTTAACTTGAGAAATGCTTGCGAGGATaatgttaaaggggtagttcacacaaaactgaaaattctgtcatcatttagtgtttgctttttccaagtctttatgagtttctttcttttgtttcacAGAAAAGAATACATGTTGAAGCTGGAAATCACTGActtcctttgtttttttcctactatgaaaagtcaatgattaccagtttttaacattcttcaaaatatattcttttggcAAGATTGgcagtattttaaaaagtgtcatagacacttagcaactgcaccttagcaactgcatagcgacATTCTAAAAAGTATCAAcagaataaactcataaagggGTAAACTGTGTAAACTGACATTTTTAAGAGGGGTTAACTCTCCCTTTAACACATCATCTACCTCAGAAAACTACTGCTAGTTAGCATTGTCTGATTGGAGGAAAGTAAAACATGCTGCGTTCTTATTGGAGGAGAGTTAAGCGTGCTGCTTGTTGGTTGGATGATTTTAACATATACTTTTAGGCTGATTGGTGAACGCTATCTGTGGCCTCACAGGCATTCATGTGGTGTCAACATGTcttcaaattgtattttaataaatacatcacaACCACTTACATTCAGCACAGATGTGAAATCCTGTATGCGCTGGATGCTGACCCAGAAGGACTTACAGATGCCCGGCACTGTGGGTTTCTTCACACGGCTTTGCTGCTTTATTACACAGCTGGTCTTGTTCAAGTTAAACCAATTATAAAGCACACAGCTCTGGTCTGGACCGCAAACACACTGACTACATGGTGGCGCAGGGAACAAAACAATATCAAACAACTTAAGGAGGCCACGTCACGAAATCTGGTCAGTCTCTGAGCGCACGATAAAAGGACTCTGACATTGCTGTGAAACTAAAATAAGAGGCTTTCGGCTTTCATCCCCGCAGCTCCTTGCCACTGATGCATTTATGACCTGTAATTGTTTCTGAGCGGTGCAAATCTTTCCAAGTAGCTGTCAATGCTGCGGACTGAGAATGGTTCAAGTAAGGCCGCAGGACCCGCAGAATGGAAACTTAGCTATATGGATGCTATACATGCTAAAAGACAACGTGCTATATATTGTTTGCAGCATTTTTACATAGCAAGGTTATTTTAGTTGATGGaaactaaaactattggtcaaaaactattattgttaactgaaataaaataaataaattaataaaataataaattaaaaactaatccAAACCAATCCAAACCAATCACACAGCAATATTCTAAACTTTAATTTCTTAGCAACCCCCTAACTATATAGAGAAACCTGTACATCAGTGTGTTTAAAATACTGAGAATTCGAGAATCTACTTAACAATATGTACtaaccaatcagaacacactaGCGACATCCTAAAAACTATttcaaacaccctagcaaccgcatagcaacatCAAAAATCCCCACGCAACAGCTTAGCCATCTCATAGCAGCATgctaaaaatattcaaaacatccTAGCGAACACATGGCAATATCCTAAAAATTATTCTGAagaccctagcaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042306 lncRNA downstream 38009 5267523 ~ 5274962 (-) True XLOC_020780
TCONS_00040972 lncRNA downstream 167949 5140530 ~ 5145022 (-) True XLOC_020777
TCONS_00040970 lncRNA downstream 250050 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040965 lncRNA downstream 306241 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00042305 lncRNA downstream 435225 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00041935 lncRNA upstream 137699 5453243 ~ 5463115 (-) True XLOC_020784
TCONS_00041936 lncRNA upstream 308829 5624373 ~ 5631081 (-) False XLOC_020788
TCONS_00041937 lncRNA upstream 310081 5625625 ~ 5631010 (-) True XLOC_020788
TCONS_00042312 lncRNA upstream 385716 5701260 ~ 5713793 (-) False XLOC_020792
TCONS_00042313 lncRNA upstream 407784 5723328 ~ 5825199 (-) True XLOC_020793
TCONS_00040976 mRNA downstream 60959 5233400 ~ 5252012 (-) True XLOC_020779
TCONS_00040975 mRNA downstream 60966 5233396 ~ 5252005 (-) False XLOC_020779
TCONS_00040973 mRNA downstream 141142 5153461 ~ 5171829 (-) False XLOC_020778
TCONS_00040974 mRNA downstream 141609 5154534 ~ 5171362 (-) True XLOC_020778
TCONS_00040971 mRNA downstream 149838 5123914 ~ 5163133 (-) True XLOC_020776
TCONS_00040977 mRNA upstream 4871 5320415 ~ 5323482 (-) True XLOC_020782
TCONS_00040978 mRNA upstream 117549 5433093 ~ 5441893 (-) True XLOC_020783
TCONS_00040979 mRNA upstream 168044 5483588 ~ 5518117 (-) True XLOC_020785
TCONS_00040980 mRNA upstream 202770 5518314 ~ 5529241 (-) True XLOC_020786
TCONS_00040981 mRNA upstream 234190 5549734 ~ 5553007 (-) True XLOC_020787
TCONS_00040947 other downstream 413677 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 413677 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 413855 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 999853 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1632246 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 394459 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 429759 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 430661 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 432057 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 555491 5871035 ~ 5894497 (-) False XLOC_020799