RNA id: TCONS_00040977


Basic Information

Item Value
RNA id TCONS_00040977
length 1772
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_020782
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5320415 ~ 5323482 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTCTGCACCAGAGCATGGCTCAATACCAAAAACCACAGCATCACTAATAAAGAGGTTATCCCAAGAGGGAAAGGATATTCAGGACTCATCCCTAAGGACTCGGAGTCTGATTGCCTGGAGTCCAATTGTGTCAAATCTCTGAATTGACCCCAGCGAGATTCAACTCCACATTTACACCATGGAAGTCCTGCGTTCCTTCAGCTCCGCCTCATCCTGTCCCGACGTCTACAACTGGACCAGCAACAGCCTCATCCTGGAGCACTACAACTACACGGGACGCCTCCACCACCGCAAGCCCTCAAAGAAAAGCGTGAGCGCTGTCACCGTCCTGTTCCTGTGCTTCAGCGTCTTCATCATCCTGGAGAACCTCATGGTGCTCCTAGCCGTGCTGTTTCGGGTGCGTCTGCGCCACCGTTGGATATTCATCTGCATTGCCAACATTGCACTGAGTGACTTGTTGACGGGAACATCATACGTGGTCAACATCTGCATGTCCGGCGAACAAACCTTCAGGCTAACCCCAATTCTCTGGCTATTCCGAGAAGGACTTTTATTTGTAGCTTTAGCGGCATCCATCTTTAGCCTTCTCTTGATCGCTGTAGAGCGATATGCGACTATGATGAAACCCGTCCACCAGAAAACCGCAACAAAGACCTACCGAGTCTACATCATGATGCTGTTATGCTGGATAACGGCGTTTATAATCGGATTCCTTCCACTTATGGGCTGGAACTGCGTTTGCGATCTGAGAAGTTGCTCGACACTTCTTCCGCTCTACTCCAAGAGCTACATCTTGTTCGCATTGGTCATCTTCTTCATAATTTTGCTCACAATCGGCGTACTCTATTTTGCAATCTATTGCCATGTACGAAGTAGCACTGAAACGATATCCGCACGCAGTCGCAAGCGTTCGCTACGCCTCCTGAAAGCCGTCATTTCAATTGTTGGGGTCTTCATGGTATGTTGGGGTCCACTGTTCATCCTCTTATTAGTGGATTTCTTTTGTTACTCTCGAAGTTGCAGCCCTCTTTTCAATCCCGAATGGGTCATTGCGCTAGCCGTACTCAACTCTGCCATGAATccgctcatttattcattcggcAGTCTGGAGCTTCGCAAAGCCATCGCGACGCTACTGTGCTGCAGTTGTCTGAAGGCAGGATTGTGCGATCCCAAAACCTTCATGTCCAAGGAGACCTCCAGCACCTCAGGGAGTCGACACAGCAGCTTGCGCAACAGCTTCAGCAAGGTGCGAAACCTGAGCACGAGTCCTCCGCCCGAACCGAAGAACGGCAAAAAAACACGCCTCAGCTCCACCACTTCTTGTTTATCTGCGTCAAGCGGTTAGCAGGGAGTTTCACCTTCGCCACAGAAACTGCACCTCCTCTAACAAACATTGTGGTGTTGTAGATTGTAGATGCTGATGATGGACAAATCGTGCAGAAAGGACTATAAAAGTGAGCAGCCATGcaagaataaatataaaaaagacaaaaaaaaaaagataataacgTAACTTGAATGCATTTCTGTACATTTGCGTTGAACGCAAAGCAATCAGAACTGTAACCTACTCAAAGAGAAACTGCCTTTCATTGTTTTCTACAAGACTGTAAAAGTAATATGTGTaacttaaaagatttaaaaaagtatattttcatATTCTATTAAAAGGgaaatgtttgttttgtacatGAAACTGTTTTAAAGATTTTGTAAGCGGATGCACTGTTGAAATGTTGGCAAGAAATaaaatgcattgatttttt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04068 FoxO signaling pathway
ko04071 Sphingolipid signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-050506-8 Predicted to enable G protein-coupled receptor activity. Acts upstream of or within neutrophil chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; eye; heart; intestine; and kidney. Orthologous to human S1PR4 (sphingosine-1-phosphate receptor 4).

Ensembl:

ensembl_id ENSDART00000145785

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042311 lncRNA downstream 4826 5312971 ~ 5315589 (-) True XLOC_020781
TCONS_00042310 lncRNA downstream 4833 5312971 ~ 5315582 (-) False XLOC_020781
TCONS_00042309 lncRNA downstream 4838 5312971 ~ 5315577 (-) False XLOC_020781
TCONS_00042308 lncRNA downstream 4871 5312971 ~ 5315544 (-) False XLOC_020781
TCONS_00042307 lncRNA downstream 4930 5312971 ~ 5315485 (-) False XLOC_020781
TCONS_00041935 lncRNA upstream 129761 5453243 ~ 5463115 (-) True XLOC_020784
TCONS_00041936 lncRNA upstream 300891 5624373 ~ 5631081 (-) False XLOC_020788
TCONS_00041937 lncRNA upstream 302143 5625625 ~ 5631010 (-) True XLOC_020788
TCONS_00042312 lncRNA upstream 377778 5701260 ~ 5713793 (-) False XLOC_020792
TCONS_00042313 lncRNA upstream 399846 5723328 ~ 5825199 (-) True XLOC_020793
TCONS_00040976 mRNA downstream 68403 5233400 ~ 5252012 (-) True XLOC_020779
TCONS_00040975 mRNA downstream 68410 5233396 ~ 5252005 (-) False XLOC_020779
TCONS_00040973 mRNA downstream 148586 5153461 ~ 5171829 (-) False XLOC_020778
TCONS_00040974 mRNA downstream 149053 5154534 ~ 5171362 (-) True XLOC_020778
TCONS_00040971 mRNA downstream 157282 5123914 ~ 5163133 (-) True XLOC_020776
TCONS_00040978 mRNA upstream 109611 5433093 ~ 5441893 (-) True XLOC_020783
TCONS_00040979 mRNA upstream 160106 5483588 ~ 5518117 (-) True XLOC_020785
TCONS_00040980 mRNA upstream 194832 5518314 ~ 5529241 (-) True XLOC_020786
TCONS_00040981 mRNA upstream 226252 5549734 ~ 5553007 (-) True XLOC_020787
TCONS_00040982 mRNA upstream 308547 5632029 ~ 5655680 (-) True XLOC_020789
TCONS_00040947 other downstream 421121 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 421121 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 421299 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 1007297 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1639690 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 386521 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 421821 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 422723 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 424119 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 547553 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_10860938_10862107.mRNA True 1525 mRNA 0.52 1 CI01000030 10860768 ~ 10862292 (+)