RNA id: TCONS_00041936


Basic Information

Item Value
RNA id TCONS_00041936
length 1765
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_020788
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5624373 ~ 5631081 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGTGACGTTGTTTGAGTTGGTATCGACCGGCTGAATAAATGCGAACCGCGCGTAGTTGGAACTGTTTGTCAGTCGAGAGTCACACGCGTTTCAGACCGGTCTGTAGCTCACGCCATCTCCAACTCGACAGAAACGCTACAACAAACAAATCTAAAGCCCGGCGGTGTTTAGGACCCCGCGCCTCTGCAGCGGCTCGCCTGCAGTCACTGCGCCAGGAATCAAACCCTCCAAAATCCTCAATTTTATCCCTGCAAATTCATTGACTGCAAGAACAGCGGCGGACAAAACCGCCGTCGACCTCTCCTCCGGCGTTCACCCCTCACCACAGAGCCCGTCAGCTCACCCTTTCGCGTTTATTTCCGATGGTTAACCTGTGTTAGTCGAGCATATCGAGGTCAGTAAGTCACATATGATGCACATCTGAACAAATACCGACGCGATTTATTTCCCGACGCGATCTTTTAAAGCTGCAGAGATGTCCGTCGCGTCGTTCCAGTGCCTCATGATTGGTGagtaacaatattattattattattattattattattattattattattattattattaggtttaTTTGTGTGCTATCAatgcgtgtttgtttgtgtagaAGTTACATTAAAATCTATGCCAATGTAGCTGTAAATACAATAATGCTAATTGTTATTGatgcgtgtttgtttgtgtagaAGTTAGATTAAAATGAAGGCTAATGTGTGTTAGCTGTACATAAATGGTGGTGTTTATTGATGCTAATTGATTTTTAATATCTgattgatatttatttacaggTTTGTAAGtgttataatcttaaaatgagtATGATATACAGTCATATAATGTGGTGGTTTATTGTATCGGAGAGCATCACAATGAGACCTGAGTGTATTGTTTTGTTCCATCATTGGTGATTTATTGATGCGCAGTGTTGTTCGGTCAGATCATTGATAATGTTTGTGTTATTGATGTGGCAGTGCAGATTTCGGGCACACGCCCCTTTTTCCTCCTCCATATCTGATAGATATTCAGCTCCAGTCAGGATCTTCAGCATGATTCATCATGTAACTGAGAAAAGCACATTTTGCAGCTGCTGTGGACGCAGATTGTTTTTGGCACGCGGATGGTGGTGTGTGTGACGGCTTGTCGTGCCCATGAGGCCACGGCTGACAGATTGCGCTGGTCAAAAGCCGCTCTGTCCAGACAGAGCGATGAGCAGACACAACAATGACAGGTCAGCTCTGTTTAGTCTAATGGCCAGCACGGATTCAGGCTTAAGCCAATTCTCAGCTCACCGTCACATTTGACCGTGAGCTCAAGTGGCATGTTGTGATTTCTGCTCGCCCTCTTCTTCATTATCACCagtgtttattattaacattggTATTTTTGGTATTCGCTGGATTGGTAAACGATATTATATGGAATCGCGATAAAATTTCTGtcgataacaatgataagctctgcaCTTTTTTACGCTAAGAGTTGGGCTTTGCGAtttagggaaaatatctaatttcttttgtcggatattgcgatttcgatttAATTTGCGATTGAATTTTGTAGTCAAACTTTTAGCTCAATCTGTATCGTAGCATCTTACGTTCTAAAATGCAGTGAGCGTTAgttaaaaaaagaactaaaaacatattaactaaattatttattcaaatttgtatttaaatattcagaaattaaacccTCATTTTTTCTACAGCaaacagtaaacaaatcaaatgacCTTACCCTACTGTAAACAAGGAT

Function

GO:

id name namespace
GO:0008286 insulin receptor signaling pathway biological_process
GO:0033596 TSC1-TSC2 complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041935 lncRNA downstream 161258 5453243 ~ 5463115 (-) True XLOC_020784
TCONS_00042311 lncRNA downstream 308784 5312971 ~ 5315589 (-) True XLOC_020781
TCONS_00042310 lncRNA downstream 308791 5312971 ~ 5315582 (-) False XLOC_020781
TCONS_00042309 lncRNA downstream 308796 5312971 ~ 5315577 (-) False XLOC_020781
TCONS_00042308 lncRNA downstream 308829 5312971 ~ 5315544 (-) False XLOC_020781
TCONS_00042312 lncRNA upstream 70179 5701260 ~ 5713793 (-) False XLOC_020792
TCONS_00042313 lncRNA upstream 92247 5723328 ~ 5825199 (-) True XLOC_020793
TCONS_00042314 lncRNA upstream 229059 5860140 ~ 5872245 (-) False XLOC_020798
TCONS_00042315 lncRNA upstream 229059 5860140 ~ 5872272 (-) True XLOC_020798
TCONS_00042316 lncRNA upstream 258766 5889847 ~ 5894546 (-) False XLOC_020799
TCONS_00040981 mRNA downstream 71366 5549734 ~ 5553007 (-) True XLOC_020787
TCONS_00040980 mRNA downstream 95132 5518314 ~ 5529241 (-) True XLOC_020786
TCONS_00040979 mRNA downstream 106256 5483588 ~ 5518117 (-) True XLOC_020785
TCONS_00040978 mRNA downstream 182480 5433093 ~ 5441893 (-) True XLOC_020783
TCONS_00040977 mRNA downstream 300891 5320415 ~ 5323482 (-) True XLOC_020782
TCONS_00040982 mRNA upstream 948 5632029 ~ 5655680 (-) True XLOC_020789
TCONS_00040983 mRNA upstream 24675 5655756 ~ 5661789 (-) False XLOC_020790
TCONS_00040984 mRNA upstream 25941 5657022 ~ 5663354 (-) True XLOC_020790
TCONS_00040985 mRNA upstream 36290 5667371 ~ 5682494 (-) True XLOC_020791
TCONS_00040986 mRNA upstream 73478 5704559 ~ 5724085 (-) False XLOC_020792
TCONS_00040947 other downstream 725079 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 725079 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 725257 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 1311255 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1943648 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 78922 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 114222 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 115124 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 116520 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 239954 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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