RNA id: TCONS_00040996


Basic Information

Item Value
RNA id TCONS_00040996
length 363
RNA type processed_transcript
GC content 0.40
exon number 9
gene id XLOC_020799
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5871035 ~ 5894628 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTTCTGCTGTTTTTGTTTACTGACAGTAAattacgacagtggcagGATTGTATCAGCGATGGTGGGAGATTCGGTCTTTCTACACACTGATGTTATCGAAATGCTGAATTACGATGTGATACGATGGAAGTTTGGACCTCAGAATGCTCTTATAGCTGAAATCAATAAACTCGAGAGATCCTTCCGTACGCTGGATGGTGATGACATAAGATTTAAAGACAGGCTGGAGCTGAGTGATCAGACTGGAGATCTGACCATTACAGACACCAGAGCTACAGACTCCGGACTTTATAAAGCATTGATCATAACAAATCAAACATGTGTTAAGaaatgtaATTTCAGTGTTGaaatctatAATCAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000185402

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042313 lncRNA downstream 45836 5723328 ~ 5825199 (-) True XLOC_020793
TCONS_00042312 lncRNA downstream 157242 5701260 ~ 5713793 (-) False XLOC_020792
TCONS_00041936 lncRNA downstream 239954 5624373 ~ 5631081 (-) False XLOC_020788
TCONS_00041937 lncRNA downstream 240025 5625625 ~ 5631010 (-) True XLOC_020788
TCONS_00041935 lncRNA downstream 407920 5453243 ~ 5463115 (-) True XLOC_020784
TCONS_00040999 lncRNA upstream 15028 5909525 ~ 5918699 (-) True XLOC_020800
TCONS_00042318 lncRNA upstream 82909 5977406 ~ 6009822 (-) True XLOC_020803
TCONS_00042319 lncRNA upstream 170373 6064870 ~ 6066256 (-) False XLOC_020806
TCONS_00042320 lncRNA upstream 260178 6154675 ~ 6167952 (-) True XLOC_020810
TCONS_00042321 lncRNA upstream 349245 6243742 ~ 6246739 (-) True XLOC_020815
TCONS_00040995 mRNA downstream 31349 5835693 ~ 5839686 (-) True XLOC_020797
TCONS_00040994 mRNA downstream 48888 5758090 ~ 5822147 (-) True XLOC_020796
TCONS_00040990 mRNA downstream 119026 5742226 ~ 5752009 (-) True XLOC_020794
TCONS_00040989 mRNA downstream 126544 5742173 ~ 5744491 (-) False XLOC_020794
TCONS_00040988 mRNA downstream 146904 5719820 ~ 5724131 (-) True XLOC_020792
TCONS_00040998 mRNA upstream 14059 5908556 ~ 5919307 (-) False XLOC_020800
TCONS_00041000 mRNA upstream 28693 5923190 ~ 5933844 (-) False XLOC_020801
TCONS_00041001 mRNA upstream 33700 5928197 ~ 5933924 (-) True XLOC_020801
TCONS_00041002 mRNA upstream 45901 5940398 ~ 5958066 (-) True XLOC_020802
TCONS_00041003 mRNA upstream 132098 6026595 ~ 6048054 (-) False XLOC_020804
TCONS_00040993 other downstream 121585 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040992 other downstream 121587 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040991 other downstream 122487 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040987 other downstream 157242 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040947 other downstream 971741 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00041005 other upstream 149675 6044172 ~ 6046595 (-) True XLOC_020805
TCONS_00041009 other upstream 190810 6085307 ~ 6087757 (-) True XLOC_020808
TCONS_00041011 other upstream 275874 6170371 ~ 6176259 (-) True XLOC_020811
TCONS_00041020 other upstream 379084 6273581 ~ 6282189 (-) True XLOC_020816
TCONS_00041022 other upstream 405814 6300311 ~ 6316979 (-) False XLOC_020818

Expression Profile

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