RNA id: TCONS_00041001


Basic Information

Item Value
RNA id TCONS_00041001
length 910
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_020801
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5923190 ~ 5933924 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgaaaaaatgacgaatctgccaatctgcaaacgtgacTAGCTAACATCTGGAATgggacaccagttaacacggtcaccagttaaaccgtaacaccgtTTCGACACACCCAAAAATAACGTTGCAGCGGAGTGGATCTTTACAAATAATACCTACTGGTCATCATCGGAAACCTTGTTTTATATCTACTGCAGTATGAAGAACATTTTATTGTTCTTTCTATGCTTTCAGGTCATGAATGGTGTGTTTGGTGATTCAGTATCAGTGAAGGAGGGAGATTGTGTCTCTCTTCACACCGGTCTTGCTGAAATAGAGAAGGAAGATGTAATACAATGGAGGTTTGAAACCATTGTCATTGCTCAAATCATTAGAACGATTAATTCGATCTCTATAAAGGAGGATGTCCTCAATGGGAAATTCAAAGACAGACTGAAGTTGGACAATCAAACTGGAGATCTCACTATCAAAAACATCAGATCTGAACATAGTGGAAATTATGACGTAAACGACTTCAATACCTTAAACAAGAGCTTTAATGTAACTGCTGTTGTAGAGGAAAAACAATCATTGATAGTGATGGAGGGAGATTCTGTCAATCTGCAACCTGATGTTCCTGAAATACTGAAATACGATGTGATCCAATGGAGGTTTGGACAACCTGTTGTAGCTAAAATCAACAGAGTGAATAGAAGTGTCTCCACACCTGATGTAAGATTTCGATACAGACTAGAGGCAAATTATTTGACTGGATCTCTAAAGATAAGTAACATCGCAACCAATTGCTCGGGACTTTATGAAGTAGACATCCGCAGCAGCAACAAACACACTATACACAAGTCATTCTATGTGACTGTCACCGGTGAGTCCATACATCTATTAATGAATTCAAATAGAGCAAAACTTTGTGAATAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-646 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000189331

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040999 lncRNA downstream 9498 5909525 ~ 5918699 (-) True XLOC_020800
TCONS_00042317 lncRNA downstream 33569 5892746 ~ 5894628 (-) False XLOC_020799
TCONS_00042316 lncRNA downstream 33651 5889847 ~ 5894546 (-) False XLOC_020799
TCONS_00042315 lncRNA downstream 55925 5860140 ~ 5872272 (-) True XLOC_020798
TCONS_00042314 lncRNA downstream 55952 5860140 ~ 5872245 (-) False XLOC_020798
TCONS_00042318 lncRNA upstream 43482 5977406 ~ 6009822 (-) True XLOC_020803
TCONS_00042319 lncRNA upstream 130946 6064870 ~ 6066256 (-) False XLOC_020806
TCONS_00042320 lncRNA upstream 220751 6154675 ~ 6167952 (-) True XLOC_020810
TCONS_00042321 lncRNA upstream 309818 6243742 ~ 6246739 (-) True XLOC_020815
TCONS_00042322 lncRNA upstream 463489 6397413 ~ 6399717 (-) True XLOC_020821
TCONS_00040998 mRNA downstream 8890 5908556 ~ 5919307 (-) False XLOC_020800
TCONS_00040995 mRNA downstream 88511 5835693 ~ 5839686 (-) True XLOC_020797
TCONS_00040994 mRNA downstream 106050 5758090 ~ 5822147 (-) True XLOC_020796
TCONS_00040990 mRNA downstream 176188 5742226 ~ 5752009 (-) True XLOC_020794
TCONS_00040989 mRNA downstream 183706 5742173 ~ 5744491 (-) False XLOC_020794
TCONS_00041002 mRNA upstream 6474 5940398 ~ 5958066 (-) True XLOC_020802
TCONS_00041003 mRNA upstream 92671 6026595 ~ 6048054 (-) False XLOC_020804
TCONS_00041004 mRNA upstream 92671 6026595 ~ 6054749 (-) True XLOC_020804
TCONS_00041006 mRNA upstream 132063 6065987 ~ 6066867 (-) True XLOC_020806
TCONS_00041007 mRNA upstream 139704 6073628 ~ 6082447 (-) False XLOC_020807
TCONS_00040997 other downstream 33569 5893469 ~ 5894628 (-) True XLOC_020799
TCONS_00040996 other downstream 33700 5871035 ~ 5894497 (-) False XLOC_020799
TCONS_00040993 other downstream 178747 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040992 other downstream 178749 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040991 other downstream 179649 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00041005 other upstream 110248 6044172 ~ 6046595 (-) True XLOC_020805
TCONS_00041009 other upstream 151383 6085307 ~ 6087757 (-) True XLOC_020808
TCONS_00041011 other upstream 236447 6170371 ~ 6176259 (-) True XLOC_020811
TCONS_00041020 other upstream 339657 6273581 ~ 6282189 (-) True XLOC_020816
TCONS_00041022 other upstream 366387 6300311 ~ 6316979 (-) False XLOC_020818

Expression Profile

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