XLOC_020794 (bcdin3d)


Basic Information

Item Value
gene id XLOC_020794
gene name bcdin3d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5742173 ~ 5752009 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040989
AATCGCCTGAGTTTGATACCAGAAGCGCTGCTTCAAAACATCGGATTCACTTCTGGCGATGGTGAACGAGTATTAATGCTGGATGTGGGATGCAACTCGGGGGATTTGTCTGTTGCTCTATATAAGCATTTACTAAACAAGGAGGCCTGTACAAGTGACTCTCCTAGACAAGAGCTGTACATGCTTGGATTTGACCTGGACCAAGATTTAATCCTCCGTGCACAAACTTCAAACCCCTTTCCCCAAAATATCCAGTTTATCCCTCTGGATATCACAGATGATACTGAAAGCCGAGCAGTGCTACAGGCCTTCTTGGGGAAGTTTGGATGCAGCCGTTTCCATTTGAGCACTTGTTTTGCTGTGACCATGTGGGTGCATCTGAACCACGGAGACGCTGCGTTTCTTTCTCTTCTGTCCAGACTGGCATCTCACAGTGAGTATCTGCTGTTAGAGGCGCAACCATGGAAGTGTTACCGTTCTGCTGCGCGCCGGTTACGCAAACTAGGCCGCAGTGACTTCGACCACTTTAAGGCCCTTAAGATCCGAGGAGACATGGCGGCACATGCTAGAGAGCACTTGGAGAAGCAGTGCAGCATGGAGCTGGTGCAGTGTTTCGGTAATACGTCGTGGGACAGAAGCCTTCTGCTCTTTAGAAGACAATGATAAAGATCAACACAATCAGAGTGTGGATGAAGTTTTAAGTGCTCAGTCTTCTG
>TCONS_00040990
ATGGAGGCTCATGACGCCCATGTGAACTCAGAGGAAAGTGAAAATCCAGGAGCTGCTCCTTATGGAAACTTTATCAACTATTCCCAGATAGCATACAatgtAATTTGCTATCTGGGTTACACCTTCAACCCACCTGAGAATCGCCTGAGTTTGATACCAGAAGCGCTGCTTCAAAACATCGGATTCACTTCTGGCGATGGTGAACGAGTATTAATGCTGGATGTGGGATGCAACTCGGGGGATTTGTCTGTTGCTCTATATAAGCATTTACTAAACAAGGAGGCCTGTACAAGTGACTCTCCTAGACAAGAGCTGTACATGCTTGGATTTGACCTGGACCAAGATTTAATCCTCCGTGCACAAACTTCAAACCCCTTTCCCCAAAATATCCAGTTTATCCCTCTGGATATCACAGATGATACTGAAAGCCGAGCAGTGCTACAGGCCTTCTTGGGGAAGTTTGGATGCAGCCGTTTCCATTTGAGCACTTGTTTTGCTGTGACCATGTGGGTGCATCTGAACCACGGAGACGCTGCGTTTCTTTCTCTTCTGTCCAGACTGGCATCTCACAGTGAGTATCTGCTGTTAGAGGCGCAACCATGGAAGTGTTACCGTTCTGCTGCGCGCCGGTTACGCAAACTAGGCCGCAGTGACTTCGACCACTTTAAGGCCCTTAAGATCCGAGGAGACATGGCGGCACATGCTAGAGAGCACTTGGAGAAGCAGTGCAGCATGGAGCTGGTGCAGTGTTTCGGTAATACGTCGTGGGACAGAAGCCTTCTGCTCTTTAGAAGACAATGA

Function

symbol description
bcdin3d Predicted to enable O-methyltransferase activity and RNA methyltransferase activity. Predicted to be involved in RNA methylation; miRNA metabolic process; and negative regulation of pre-miRNA processing. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm. Orthologous to human BCDIN3D (BCDIN3 domain containing RNA methyltransferase).

GO:

id name namespace
GO:2000632 negative regulation of pre-miRNA processing biological_process
GO:0032259 methylation biological_process
GO:0010586 miRNA metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008171 O-methyltransferase activity molecular_function
GO:0008173 RNA methyltransferase activity molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-050208-327 Predicted to enable O-methyltransferase activity and RNA methyltransferase activity. Predicted to be involved in RNA methylation; miRNA metabolic process; and negative regulation of pre-miRNA processing. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm. Orthologous to human BCDIN3D (BCDIN3 domain containing RNA methyltransferase).

Ensembl:

ensembl_id ENSDARG00000074111

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040989 False 716 mRNA 0.48 2 5742173 5744491
TCONS_00040990 True 801 mRNA 0.48 3 5742226 5752009

Neighbor

gene id symbol gene type direction distance location
XLOC_020792 NA coding downstream 18042 5701260 ~ 5724131 (-)
XLOC_020791 dnase1l4.1 coding downstream 59679 5667371 ~ 5682494 (-)
XLOC_020790 ccdc51 coding downstream 78819 5655756 ~ 5663354 (-)
XLOC_020789 mcm2 coding downstream 86493 5632029 ~ 5655680 (-)
XLOC_020788 NA coding downstream 111092 5624373 ~ 5631081 (-)
XLOC_020796 cers5 coding upstream 6081 5758090 ~ 5822147 (-)
XLOC_020797 si:rp71-36a1.5 coding upstream 83684 5835693 ~ 5839686 (-)
XLOC_020798 NA coding upstream 108131 5860140 ~ 5872272 (-)
XLOC_020799 BX005329.1 coding upstream 119026 5871035 ~ 5894628 (-)
XLOC_020800 si:rp71-36a1.1 coding upstream 156547 5908556 ~ 5919307 (-)
XLOC_020784 NA non-coding downstream 279058 5453243 ~ 5463115 (-)
XLOC_020781 NA non-coding downstream 426584 5312971 ~ 5315589 (-)
XLOC_020780 NA non-coding downstream 467211 5267523 ~ 5274962 (-)
XLOC_020803 NA non-coding upstream 225397 5977406 ~ 6009822 (-)
XLOC_020805 CU468041.1 non-coding upstream 292163 6044172 ~ 6046595 (-)
XLOC_020806 NA non-coding upstream 312861 6064870 ~ 6066867 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_10628602_10631875 BCDIN3D coding CI01000030 null 10628602 ~ 10632112 (+)