RNA id: TCONS_00040999


Basic Information

Item Value
RNA id TCONS_00040999
length 1677
lncRNA type sense_over
GC content 0.39
exon number 5
gene id XLOC_020800
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5908556 ~ 5919307 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTTATATAGGTGTCTGCATAAGCTGTCAGCGGACACACTTCGCAGAGGGGGAACTGGAATTCCAGAAGGGAGCAGAATCGACTGCTAACGTTACACCCGCAGTCTGTTGCTGTTCTGACACACCCGAAAAAACACTGGAGTGGATATTACCAATACAATCAACTAAGCTCGGATTCTAAAGTCCAAGGCATTATGGGAAATGTTGTATTGTTTTTCCTCTTCTCGCTGTTCTTGGAAGGTGTGTCAGGTGATGCTCAGGTGGTATCAGTAAAGGTGGGAGATTCTGTCACTTTACAGACCGATTCTCAAATACAGAGCGGCGATGTGATATTCTGGAGGTTTCAACCTCAAAACATAATGATTGCTTCTATTAACAAGGTAAAAGCTAGTTTTGAATTAAACAAGGAGCTTGATGGTAATTTCAAAAGCAGACTGCAGCTGCGTGTTCAGTCTGGATATCTCACCATCAAAAACATCATGACAACAGACTCTGGTGATTATGAAGTATCCAATGACAATGGCATCAAAAAGAGTTTCAAAGTCAGTGTTGTGTCTGTTGACTTCACGAAGACCGTTTCTGTGCTGGAGGGAGATTTAGTCACTTTACACACTGATGTTCCTGATATAAAGATATATGATGCAATAGAGTGGAGGTTTGAATATCAGAAATCTcctgtagctgaaataaaagctGGAAATGTCCCTAAATATGATGAAACTGATACGAGGTTCAAAGACAGACTACAGCTGGATCCTCAGACTGCATCTCTGACCATCAAGAACATCAGAACTGAACTGGCTGGACTTTATAAAGCTGACATTATCAGCAGTGGACACACTGTACACAAGTCATACAACGTCATCGTCATTGCTCCACGGGTACCTGTATGCGGACCTTCAGGTTGGTCTTCAGGTGCTGTCGCAGGGATTGTtgtttgtcttcttcttctggtGGCTGTAGCTGTAGCTTTGGTCATTTACTATCGCCGCAAGATTGCTGTTCTAGAAAAATCGCttaACAGAGACAATGTCTTGGTGCCTAAACCCATTCATACCAACAATGAATGAAACCAATCAAAAGGTATGGTCATGAAAAATAATCATATGTTTCTTATGTGAGCCCAAAATGaagaagctgtacaatattaatATGCTGTGATGCATATAGCTGAGCTTTAAAGCAACCACAAAACAAGTTGAATCATTATTTGATGTAAAGCTAATCTAAGAAGAAAATTGTACCTGTTACTCTTTGCATGTGATGCattcatgctaagctaagctgtTCCCACAATAACTggtcatttattcatgtatagttgttgtttttgagTCAGATCAGAGTGACGGGGCACTTTCTTCCCTTTCCCAGAAAGAcctgtgtttgtgtttaattCAAAAACCATCCAATGTGCCACTGACAAACTGACCACACTTGTTTAACGCATTTATAAGACTTTAGTGTTATTTAGCTTTTGTGTTTACCTATAGTAAAAGTGTTATAGTTTAGTGCTACATTACatatcttcattttattttatctgtctATATTTTGTATCTGAATATTTTCTAATTATCTTTGGATTATCTGTTGCTCTGAATGTGAGATCTGTCACTCTGGGAATTATTTTgactattttaattttgtttgtattaTAAAGTGTCTTTATGCTGT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042317 lncRNA downstream 14897 5892746 ~ 5894628 (-) False XLOC_020799
TCONS_00042316 lncRNA downstream 14979 5889847 ~ 5894546 (-) False XLOC_020799
TCONS_00042315 lncRNA downstream 37253 5860140 ~ 5872272 (-) True XLOC_020798
TCONS_00042314 lncRNA downstream 37280 5860140 ~ 5872245 (-) False XLOC_020798
TCONS_00042313 lncRNA downstream 84326 5723328 ~ 5825199 (-) True XLOC_020793
TCONS_00042318 lncRNA upstream 58707 5977406 ~ 6009822 (-) True XLOC_020803
TCONS_00042319 lncRNA upstream 146171 6064870 ~ 6066256 (-) False XLOC_020806
TCONS_00042320 lncRNA upstream 235976 6154675 ~ 6167952 (-) True XLOC_020810
TCONS_00042321 lncRNA upstream 325043 6243742 ~ 6246739 (-) True XLOC_020815
TCONS_00042322 lncRNA upstream 478714 6397413 ~ 6399717 (-) True XLOC_020821
TCONS_00040995 mRNA downstream 69839 5835693 ~ 5839686 (-) True XLOC_020797
TCONS_00040994 mRNA downstream 87378 5758090 ~ 5822147 (-) True XLOC_020796
TCONS_00040990 mRNA downstream 157516 5742226 ~ 5752009 (-) True XLOC_020794
TCONS_00040989 mRNA downstream 165034 5742173 ~ 5744491 (-) False XLOC_020794
TCONS_00040988 mRNA downstream 185394 5719820 ~ 5724131 (-) True XLOC_020792
TCONS_00041000 mRNA upstream 4491 5923190 ~ 5933844 (-) False XLOC_020801
TCONS_00041001 mRNA upstream 9498 5928197 ~ 5933924 (-) True XLOC_020801
TCONS_00041002 mRNA upstream 21699 5940398 ~ 5958066 (-) True XLOC_020802
TCONS_00041003 mRNA upstream 107896 6026595 ~ 6048054 (-) False XLOC_020804
TCONS_00041004 mRNA upstream 107896 6026595 ~ 6054749 (-) True XLOC_020804
TCONS_00040997 other downstream 14897 5893469 ~ 5894628 (-) True XLOC_020799
TCONS_00040996 other downstream 15028 5871035 ~ 5894497 (-) False XLOC_020799
TCONS_00040993 other downstream 160075 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040992 other downstream 160077 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040991 other downstream 160977 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00041005 other upstream 125473 6044172 ~ 6046595 (-) True XLOC_020805
TCONS_00041009 other upstream 166608 6085307 ~ 6087757 (-) True XLOC_020808
TCONS_00041011 other upstream 251672 6170371 ~ 6176259 (-) True XLOC_020811
TCONS_00041020 other upstream 354882 6273581 ~ 6282189 (-) True XLOC_020816
TCONS_00041022 other upstream 381612 6300311 ~ 6316979 (-) False XLOC_020818

Expression Profile

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