RNA id: TCONS_00040991


Basic Information

Item Value
RNA id TCONS_00040991
length 798
RNA type processed_transcript
GC content 0.40
exon number 5
gene id XLOC_020795
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5745303 ~ 5749450 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGAATCATGCAAGGATGCAAGCTGAAGGAAAGGACAACTCTCACATCAGTGCATTACTAATTGTTTGACTTCATCATCAAGCACACCagACGGTGCGGTGGTACAGTGGATAGCTCTGTTGCCTCCCAGCAAAAATGTTtctggttcgagcatcggctgggtcagttggcatttctgtgtgaagtttgtatgttctccccgtgttggcgtgggtttcctccaggtgctccggtttcccccacaagacatgcggtacaggtgaattgggtaagctaactcagattgtgatggacctggaatgcgacaccagttactcttaagtcaagaaccaaataaagCACCAGAGTACAGATTATGGAGGTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAAAAAGACCACATCAAGATCTGCAGTCAGTTCAAAGGATGTTTTGcattggactgtttttttttttggctttgaccCTTGCTCGCCCCTGACCTCACTCTTGGACTGCCCTGTtggattttcagtttatttaatttaatttttatttttattttttggttctgggaaaatgctaataaatatttagttgtaaTTATTTAAGTATTATGTTTAGTTAAATATGCGATTTCTGTGTTTGTTCCGTCTACTCATACTTGTTTATCTTGTTTCTgtaattatcatttgtttatttgaccccTGCCTCGCCTTTGATCTTGTTTTTGGATTGCcctttatatatctttttaattattGGTTCTGGCTTTatggttataaaatatttg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136954

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042312 lncRNA downstream 31510 5701260 ~ 5713793 (-) False XLOC_020792
TCONS_00041936 lncRNA downstream 114222 5624373 ~ 5631081 (-) False XLOC_020788
TCONS_00041937 lncRNA downstream 114293 5625625 ~ 5631010 (-) True XLOC_020788
TCONS_00041935 lncRNA downstream 282188 5453243 ~ 5463115 (-) True XLOC_020784
TCONS_00042311 lncRNA downstream 429714 5312971 ~ 5315589 (-) True XLOC_020781
TCONS_00042314 lncRNA upstream 111592 5860140 ~ 5872245 (-) False XLOC_020798
TCONS_00042315 lncRNA upstream 111592 5860140 ~ 5872272 (-) True XLOC_020798
TCONS_00042316 lncRNA upstream 141299 5889847 ~ 5894546 (-) False XLOC_020799
TCONS_00042317 lncRNA upstream 144198 5892746 ~ 5894628 (-) False XLOC_020799
TCONS_00040999 lncRNA upstream 160977 5909525 ~ 5918699 (-) True XLOC_020800
TCONS_00040989 mRNA downstream 812 5742173 ~ 5744491 (-) False XLOC_020794
TCONS_00040988 mRNA downstream 21172 5719820 ~ 5724131 (-) True XLOC_020792
TCONS_00040986 mRNA downstream 21218 5704559 ~ 5724085 (-) False XLOC_020792
TCONS_00040985 mRNA downstream 62809 5667371 ~ 5682494 (-) True XLOC_020791
TCONS_00040984 mRNA downstream 81949 5657022 ~ 5663354 (-) True XLOC_020790
TCONS_00040994 mRNA upstream 9542 5758090 ~ 5822147 (-) True XLOC_020796
TCONS_00040995 mRNA upstream 87145 5835693 ~ 5839686 (-) True XLOC_020797
TCONS_00040998 mRNA upstream 160008 5908556 ~ 5919307 (-) False XLOC_020800
TCONS_00041000 mRNA upstream 174642 5923190 ~ 5933844 (-) False XLOC_020801
TCONS_00041001 mRNA upstream 179649 5928197 ~ 5933924 (-) True XLOC_020801
TCONS_00040987 other downstream 31510 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040947 other downstream 846009 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 846009 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 846187 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 1432185 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040996 other upstream 122487 5871035 ~ 5894497 (-) False XLOC_020799
TCONS_00040997 other upstream 144921 5893469 ~ 5894628 (-) True XLOC_020799
TCONS_00041005 other upstream 295624 6044172 ~ 6046595 (-) True XLOC_020805
TCONS_00041009 other upstream 336759 6085307 ~ 6087757 (-) True XLOC_020808
TCONS_00041011 other upstream 421823 6170371 ~ 6176259 (-) True XLOC_020811

Expression Profile

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