RNA id: TCONS_00040980


Basic Information

Item Value
RNA id TCONS_00040980
length 3826
RNA type mRNA
GC content 0.38
exon number 6
gene id XLOC_020786
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5518314 ~ 5529241 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGTTCTCCGATTTATTTTTATACGTTTTGCTTTTGAAAGCTGTGTTTGCTGATTCAGGTGAAGTGGAGGTTCTATCAGTAATAGAGGGCGATTCTGTCACTCTACACTGTAGTCTTAATAGTATAAAGAAAGTTGAGGTGATCCTGTGGACATTTGGAACTGATCGTATAGCCGAAATCAACAAACTGATCGATAGCATCTCATTATATGTTCTTGATGAGAcattcagagacagactgaagcTGGATCATCAGaatggatctctgaccatcacggACATCACATTTAAACACGCTGGACTTTACGAACTGCAGATCATCGGTGGAAAAGAGGTCTTTTCCAAGAGATTCAATATTACAGTTTCTGCTCGTCTGCCTGTTCCTGTCCTTATCAGGGACtgttcttcctcctcctcctctccatcAGAGCAGTATTGTTCAGTGgtgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaaTATCAGGATAAAAACACCTACAGATGTGTGATCAACAACACCATCAGCAACCAGACCACACGTCTGGACATCAACACACTCTGTTACACATCTGATGATCTCAATAAAGAAGACGACTTACCCGTCAGTCGTGTGCTGCTGATCTGCTTTGGTGTTGTAACTCCACTGATTCTGGCTGCAGTTGCGATCTTCTGCTGGAGACGCAGAAAAAGACAAGAACAATTTGATGGTGATGATACTGCTGAGATGGATGAACTGAAGACAGTGTCAGTGAGTGTGGGAGAGTCCGTCACTCTAAACACCGGCATCACCAAAATAAAACGTTTTGATGTGCTGCAGTGGAGGTTTGGAGAGCTAAATTCAGACGTCACAAACCCATTTATTGTTATAAACAGACTGAAAGGATCAAACAGTGTTGATGGTGCTTCTGGACATAATGAGCCATTCAAGGACCGATTACAGCTGGATAAACAAAATGGATATTTAACAATCAGCGATATCAGACCCACAGACTTTGgaatatataaactaaatatcGCCAGGAATCGGAGAAATGTGATCTCCAAGACATTTATTGTCAAAGATTCATCAGAAAAAGAAGAGGCATCAGAGACAGAATCACTGTTGACGACTGAATTGATCTCAGACACTGGTGTACATGTGGCGGAGCGGACAAACTCAGGAGGGCGGGGGGAAGCAGCTAATTTAACTCCCTTTAAACAGCCACCAACCCTGCCGACTACGCCAGAATGTGGCGGAGCAGACGAAGCGGGGGAGGAGCTAAATTGCTAGGTGTTAAGGTTTGCTCTCTTCGAACGACCCCAATCTATTTGATTTGATGAAACCGACTACGCCGCCTGGGATTCAAACCAAGAAATTGAAATATAAAAGGTCACACAGATTAGTCTCTTTTAAATGTTAAGGAGCAGACAGAAGACATACATGAGTATGTACAATAATACAAAAGCTTATTCgcaaatatttttgtgtttctaCCGAACATGTTTTAGCTGCAATTTAGATATTTATAACCGTTACATATTATAGTATGtttttgtgagtgtgtttttTCAGTGTTAATGAGCGAATTGGTGATGTTTGAAATCGTTGTTGCATGTGTaacctttaataaaaatatatttgactaATGGTTTCTTTGACACCAAATTTAGGTTAGGTTTTTGCTTTAATGTTGACACAACCTGTTTCAACAAACCTCTATATTGTCTGTTATGCTGATATTCACATAAACGACGTTGTTTATGTTTGTTAAATTACAtataatatcagttttaataatttaagagGAAGAAAAGAACAAAGTGGTTGTCACATGGGTTTGCAAAATCAATTTACAATACATTTGAATCACATTGTTTACAATGACATACTCAGTCTATTTTTGGCCATACTTGCACTTTTTTGAATCAGGTTCAGGTTAAAAGTCAGTTTTTCCATACAGTGTATTTCCTTTACAATTACTATCCATTGAGCCCATGTTGGAGGATCAAACTGAAACCATTTTCGagttacagttgaaatcagaagtttacatacactctaaaaaaaggaacataaccattttttaaaaatgtctgatggtaaatcatactaaacgtttactattttaggtctgttagaattacctaaatgatttacatttgctaaatgccagaataatgaaataattttttctttgagagtttttaaataaatgtctaGACAgtgaaaagtttacacacatttccttggtctttttttttagctttgctttaaaactgtataacttggtcaaatgttttgggtctcctttcacaagcttctcacaatagtttgaaggaattttggcccattcctcctgatagaattggtgtaactgagtcagatttgttggctgtcttgctcgcacaagctttttcaactctgcccacaaattttctataggattgagatcagggctttgtgatggccactccaaaacattcactttgttgtccttaaagcacattttaactaatttggcagtacgcttagggtcatggtctgtttggaagacctatttgtggccaagttttaatttcctggctgatgtctcgagatgttgcttcagtatttctacataatgttctttcttcatgatgccatctatgctgtgaagtggaccagtccctcctgcagcaaaacagccccacaacatgatgctgtcgcccccatacttcacagttgggatggtgttcctaggcttgtaagctttacCCTTTGTCcttcaaatgtaacactggtcattatggccaaacagttcaatcctagctccatcagagcacaggacatgtctccaacaattattctttttccctgtgtaattcagcaaattgtaatctggctttgttgttgattctggcttgttgatttttccatgttgtcacacaaggaagcagtgtgtttgaggttttgcttaaatactattctacagtcgTGCCTCCaatgaactcaaatgttgtcaatttgcCAATCAGAAGCTTCCAAAACCTTGaaaccatcatctgagctttttttcaatcttattgtatgtaaacttgactttcaagaaaagttataacaatttctcaaaaatctctctcattattctgctattaagcagtacagaaacaaatgtgaaaatcctgacttacctaaaagagagaaagtttagtcacattaacatctgactttttttaaatggttgtgcctgtttatacagtgtatgtaaacttctgtttTAAACTGTATGGTTTTTCTGCTACTTACCAAAATTATTTGTCATTTAGTTGAACCAGTTTCTAGTATTTTCCCAAAGTATAATGGCATAAATGAGTAATCCAATTCTTCTCcaatcatctttttttatttcagtcgcTACTTCATGCCAGCAGGGCTGTATTTTTGGGAAAGCCCAAAAAATGTGAACATGGTTCGCCATCGAGGTTCCACATTGTCTTCAACAAGAGCCCAAACTTTCAATGCCCGTACGCAATGCAGAGTTTAGGAGTTATAAAGAGCCTCATCAGACTTTTCCATCCAAACTCTCTCCAAGCTCTCCAGTTTGTAGTATTTGCATGTGTGACACACATATCTGTCCAGTCTTTCCCATATATTTGTTGGTCTAACACTTTCTAAGAAAAGTTTGAGCGATGTCTGCCCTCTAGTGGGAAATATACAGATTGTGCACTTTCTAATATAACGCGAATGGGAGGCTGTTCGTCTGAAAGTTCAATTTAAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157893

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041935 lncRNA downstream 55199 5453243 ~ 5463115 (-) True XLOC_020784
TCONS_00042311 lncRNA downstream 202725 5312971 ~ 5315589 (-) True XLOC_020781
TCONS_00042310 lncRNA downstream 202732 5312971 ~ 5315582 (-) False XLOC_020781
TCONS_00042309 lncRNA downstream 202737 5312971 ~ 5315577 (-) False XLOC_020781
TCONS_00042308 lncRNA downstream 202770 5312971 ~ 5315544 (-) False XLOC_020781
TCONS_00041936 lncRNA upstream 95132 5624373 ~ 5631081 (-) False XLOC_020788
TCONS_00041937 lncRNA upstream 96384 5625625 ~ 5631010 (-) True XLOC_020788
TCONS_00042312 lncRNA upstream 172019 5701260 ~ 5713793 (-) False XLOC_020792
TCONS_00042313 lncRNA upstream 194087 5723328 ~ 5825199 (-) True XLOC_020793
TCONS_00042314 lncRNA upstream 330899 5860140 ~ 5872245 (-) False XLOC_020798
TCONS_00040979 mRNA downstream 197 5483588 ~ 5518117 (-) True XLOC_020785
TCONS_00040978 mRNA downstream 76421 5433093 ~ 5441893 (-) True XLOC_020783
TCONS_00040977 mRNA downstream 194832 5320415 ~ 5323482 (-) True XLOC_020782
TCONS_00040976 mRNA downstream 266302 5233400 ~ 5252012 (-) True XLOC_020779
TCONS_00040975 mRNA downstream 266309 5233396 ~ 5252005 (-) False XLOC_020779
TCONS_00040981 mRNA upstream 20493 5549734 ~ 5553007 (-) True XLOC_020787
TCONS_00040982 mRNA upstream 102788 5632029 ~ 5655680 (-) True XLOC_020789
TCONS_00040983 mRNA upstream 126515 5655756 ~ 5661789 (-) False XLOC_020790
TCONS_00040984 mRNA upstream 127781 5657022 ~ 5663354 (-) True XLOC_020790
TCONS_00040985 mRNA upstream 138130 5667371 ~ 5682494 (-) True XLOC_020791
TCONS_00040947 other downstream 619020 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 619020 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 619198 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 1205196 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1837589 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 180762 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 216062 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 216964 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 218360 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 341794 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_10766284_10769462.mRNA True 1203 mRNA 0.42 6 CI01000030 10766284 ~ 10769484 (+)
rainbow trout (Oncorhynchus mykiss) TU231810 True 201 lncRNA 0.45 1 NC_048566.1 92641487 ~ 92641687 (-)
rainbow trout (Oncorhynchus mykiss) TU255248 False 6422 TUCP 0.51 6 NC_048567.1 10753617 ~ 10767669 (+)
eurasian perch (Perca fluviatilis) TU231810 True 648 lncRNA 0.45 1 NC_053127.1 35283252 ~ 35283899 (-)
mexican tetra (Astyanax mexicanus) TU255248 True 359 lncRNA 0.40 1 NC_035918.1 9125176 ~ 9125534 (+)