RNA id: TCONS_00040973


Basic Information

Item Value
RNA id TCONS_00040973
length 4322
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_020778
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5153461 ~ 5171829 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATCCGGGGAGGAATATGGCTGTGGACATTCAGTTTGACTCGCACCTTTCTGTTTATTCTTACAAAGCTAAcaaccacacacaaacaacaacaacataaacccTCGGGTCTCTTCAAATCCCAGGTATTCCTCAAGTAAACATCATCTATAAAGTTGACATGTTGTTTACAGGAGTAAAACAACCCGCTATGAATTCCCACTTCATTGTTCAGCAGAATTTCCTCTGGGAATTTTTCAGCCTTGGATTTGCGCAGCATAATGACGGGAAACCATATGCGAGGCTGGACTCGCAGGTCTCCCTGcgttctgattggtccactcaGAAGACCAACTCGATTGTGATTGGTCAATTCGCACGTCAGTCACCGGGCGCCTTGGACCCTCAAGTTTGAAACTTTTCGAAAAGGTGGAGTCAGGTTACAAACTCTGGTAACCAAACGCGAAAAGAGGGAGAAGAAAACGCTTGAATTATTTACACCAGGCGCTCAGACCCAACGCATACCTGTCGGACGCCTTTCACCAGCTTTAAAAGACAGTTTTAAGACTTATCCATGCGGCTGTAGGCTGTTTATTGGTTGTCAGGGTGTTTAGATGGAGGCTTGAAGAACGAAAGATACACTTTAGACGCCTTGTATCCGGTTCAAATAGGGGAGAGACATCATGGACTCGTTCAGCACCAAGAACCTAGCCCTGCAGGCGCAGAAGAAGCTCATGAGCAAGATGGCGACCAAGACAGTGGCCAACCTCTTTATAGACGACACCAGCAGCGAGGTACTGGACGAGCTGTACAGAGTCACCAAAGAGTACACGCGCAACCGCAAGGAGGCCCAGAAGATCATCAAAAACCTCATCAAGATGGTGGTCAAGTTGGGCGTCCTCTACCGCAACGGTCAATTCAACAACGAGGAGCTAGCGTTAGTCGAGCGTTTTCGTAAGAAGGTGCATACGCTGGCGATGACAGCTGTTAGCTTCTACCAGATCGACTTCACTTTTGATCGACGCGTCATGAGTAATCTACTCAATGACTGCCGTGAACTTCTGCACCAGGCCATCAATCGGCATCTAACGGCGAAATCTCACGCCCGAATCAACCATGTCTTCAATCATTTCGCCGATTGTGACTTCCTCGCGACGCTATACGGACCTTCAGAAGTGTACCGCGGCCACTTGCAGAAGATCTGTGAAGGAGTCAACAAGATGCTGGACGAAGGCAATCTTTGATGAAGACCTCTGaagtctttttattatttaaacatgttttCGGTATTTGTTTAAAATGGAAGATCTCGTGCCTTATTTTTGCGCTAAATTGAAGTACGTTTGTACTTGAAGTCGAATGTTGTCGTATATTTTTATGGTTTACAGTGCAAACGAAGAGCTCCATATTTGAAGGCAATGTGAGATTCAGATATCAGTGGAAATGAAGGACCATTTACAAAGCTTTTTTTCAATGCCGAGAGGAAATATTCAAGCACTGCGAACACAGAATGCACTGGGGGGGGGACACAATATGAAACACTTCATAAGTAATATAAGGAAATGAACCGCAGCATCAGGCGTCTCACTTCCTGAAAAAGGACATTCACTCTGAAACCTAAAAGGAAGATGTTTTTGGTTAACTTTAACCCCTGTGATTTCTAAACTTGATCATATACAGAGCTGTGGCTGGAAAAATCGTTAAAGAAATCGATTTTCAAAAGATATCGTGATTCTCTCGTATACTTTACAAACTGCTGTACTCTGCGACCTAGAGCgtcatctgttgttaaaaactagccaagagggTCATCCGCTGTTCCAAACTAGCGTacagcaccatctgctattaaaaaactAGCATAGATCGCCATATGAGGCTAAAAACTAACCTACAGCTTCatttgctgttcaaaactagcctagagcgtcatctgctgtttaaaactagccttgagcgtcagctgctgtttaaaactagtcttgagcgtcatctgctgttcaaaactagtcttGAGCGTCTTCTGCTGTTCAAAATTTGTCttgagcatcatctgctgttcaaaactagccttcAGCctcatctgctattaaaaaaactAGTGTAGATCACCACCTGCTGCTATAAACCTaatctagagcaccgtctgctgttaaaaactagcctagagcgtcatctgctgttcaaaactagcatacagcaccatctgctattaaaaaaaactagcatagaTCACCTTCTGAGGTTAAAAATTAGCCTTGAGCGTTATCTGCTATTCAAAACTAGCATACAGTGCCATGTGCTATTTAAAAACTAGCGTAGATCGCCATCTGCTGCTAACTAACCtatagcactgtctgctgttaaaaactagccacttcatctgctgttcaaaactagcatacagcaccatctgctattaaaaaaactAGCATAGATCACCTTCTGAGGCTAAAAATTAGTCTAGATCGCCGTCTTCTGTTTAAAACTAGCATacagcaccatctgctattaaaacaAACTAGCATAGATCGCCTTCTGAGGCTAAAAATTAGCCTTGAGCGttatctgctgttcaaaactagcataCAGTGCCATCTGCTATTTAAAAACTAGCGTAGATCGCCATCTACTGCTAAAAAACTAACCTATAGCACCgtttgctgtttaaaactagcatacagcaccatctgctattaaaaaaaactagcatagaTCGCCTTCTGAGgctaaaaactagtctagatcGCCGTCTTCTGTTCAAAACTAGCATacagcaccatctgctattaaaaaactAGCATAGATCGCCTTTTAAAGCTAAAAATTAGTcttgagcgccgtctgctgttaaaaactagccttgagcgtTATCTGCTGTTCAAACCTAGCATACagtgccatctgctattaaaaaactAGCGTAGAtcgccatctgctgctaaaaactaacctagagcactgtctgctgttaaaaactagcctagagcgccgtctgctgttcaaaactagcatacagcaccatctgctatttaaaaactagcatagatcGCCTTCTGAGGCTAAAAACTAGtttagagcaccgtctgctgttcaaaacgaGCATATATCACCATCTGTTGTTCAGAATTAGCATACAGCCATGTCTGCTTTTTGAAACTAAGCTCATAATCAGTTCAAGAGAGAATagcgatgcattttgaaaatcgcAGAATCGATTTCTCCCCCAATTTTTCCCCACAGCTCTAGTCCTATAGTGATttatattagttttgttttccacTCCATGGCGCCCCCTGCTGATTGGAGGTCTTTCCAGGGATGCAGTTCCTTATAGCGGAGCGAAGAATGCGCTAGAATGTCACTGTGCTACATTTCAGCATGTTTATTTgctgttttaatgaaggtttctTTGTGTATCGGTATATGACTGAGCCGTTATTCTCCGTACACGTCACTTTTAACTTGTATGGACAATCAATATGACAAATCTCCCATGTTACTTGGGATTAACATTATCTTCAGCCGTTTTGACAGATTAAAGGAACATTTTGGGTGGAATATACAAGTTAAGCTCCTTCAACATGACCCGTGGGATGTCGGATACCACAAGAAATCTGTAAAAGCTACCAAAAATGTGCAGTAatgcacttttaatagtttgagACAGCTGCGTACTGTCCCATACACCTCCATTGTTTGTATCTGCACTTGATTTATAACCTTGAATACTTCAATGTTGTGTATTTTTACAAAATGCCCTATTTTAAAGGATACTTTAAGGCCCTGGTGCCTAAATAAGGCTCTTAGTGAACAGTTGTATACATTGTGTCTTGACCTTAAAACATATTGTCTATATATACGTGCACTTATTGTTATTATAGTTTTCTTTTACACGTCAGTAGCAGAGGGTTGTTTGACTTTCTCTTCTTGTGACTCGATTTTTAGGTGAAACTCAAGCTCACAAAGTATCAAATAATTCAAGGGAAGAAggaaaaaacgaaaaaaaatagAAGTGAAAGTCGCGAGTGACTCCTCAAAGCCATACCTCCTGATTATTTTCAAGCCTCTCAGGGTTCTGTCTTGAACGCGTTTTTCCTTGTGGCGTTTTTTTGggccaatttaaacaattatgaaacaaatatcttgtttttctttttgcaaaTGTCACCCGAGCATTACAAGACATCGCATTCACCACATTTTCTTTTGTCGAGTTTTAaaggttatttttttttgtcacaatcaAGTTctgtaaatgctgtttttttttttctagaaacgATGtacataaatacagtatttgtgtgtgcgtgtgtatatataaatgtcaTTCTTAAGAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-695 Predicted to be involved in negative regulation of TOR signaling. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be active in cytoplasm. Is expressed in otic vesicle; pectoral fin; pharyngeal arch; and pronephros. Orthologous to several human genes including TNFAIP8L1 (TNF alpha induced protein 8 like 1).

Ensembl:

ensembl_id ENSDART00000140313

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040972 lncRNA downstream 8439 5140530 ~ 5145022 (-) True XLOC_020777
TCONS_00040970 lncRNA downstream 90540 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040965 lncRNA downstream 146731 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00042305 lncRNA downstream 275715 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00042304 lncRNA downstream 299646 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042306 lncRNA upstream 95694 5267523 ~ 5274962 (-) True XLOC_020780
TCONS_00042307 lncRNA upstream 141142 5312971 ~ 5315485 (-) False XLOC_020781
TCONS_00042308 lncRNA upstream 141142 5312971 ~ 5315544 (-) False XLOC_020781
TCONS_00042309 lncRNA upstream 141142 5312971 ~ 5315577 (-) False XLOC_020781
TCONS_00042310 lncRNA upstream 141142 5312971 ~ 5315582 (-) False XLOC_020781
TCONS_00040968 mRNA downstream 53637 5056288 ~ 5099824 (-) False XLOC_020775
TCONS_00040969 mRNA downstream 53637 5056290 ~ 5099824 (-) False XLOC_020775
TCONS_00040967 mRNA downstream 98688 5036179 ~ 5054773 (-) True XLOC_020774
TCONS_00040966 mRNA downstream 101772 5036179 ~ 5051689 (-) False XLOC_020774
TCONS_00040964 mRNA downstream 146660 4999256 ~ 5006801 (-) False XLOC_020773
TCONS_00040975 mRNA upstream 61567 5233396 ~ 5252005 (-) False XLOC_020779
TCONS_00040976 mRNA upstream 61571 5233400 ~ 5252012 (-) True XLOC_020779
TCONS_00040977 mRNA upstream 148586 5320415 ~ 5323482 (-) True XLOC_020782
TCONS_00040978 mRNA upstream 261264 5433093 ~ 5441893 (-) True XLOC_020783
TCONS_00040979 mRNA upstream 311759 5483588 ~ 5518117 (-) True XLOC_020785
TCONS_00040947 other downstream 254167 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 254167 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 254345 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 840343 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1472736 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 538174 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 573474 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 574376 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 575772 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 699206 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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