RNA id: TCONS_00040974


Basic Information

Item Value
RNA id TCONS_00040974
length 2749
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_020778
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5153461 ~ 5171829 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATTATTTACACCAGGCGCTCAGACCCAACGCATACCTGTCGGACGCCTTTCACCAGCTTTAAAAGACAGTTTTAAGACTTATCCATGCGGCTGTAGGCTGTTTATTGGTTGTCAGGGTGTTTAGATGGAGGCTTGAAGAACGAAAGATACACTTTAGACGCCTTGTATCCGGTTCAAATAGGGGAGAGACATCATGGACTCGTTCAGCACCAAGAACCTAGCCCTGCAGGCGCAGAAGAAGCTCATGAGCAAGATGGCGACCAAGACAGTGGCCAACCTCTTTATAGACGACACCAGCAGCGAGGTACTGGACGAGCTGTACAGAGTCACCAAAGAGTACACGCGCAACCGCAAGGAGGCCCAGAAGATCATCAAAAACCTCATCAAGATGGTGGTCAAGTTGGGCGTCCTCTACCGCAACGGTCAATTCAACAACGAGGAGCTAGCGTTAGTCGAGCGTTTTCGTAAGAAGGTGCATACGCTGGCGATGACAGCTGTTAGCTTCTACCAGATCGACTTCACTTTTGATCGACGCGTCATGAGTAATCTACTCAATGACTGCCGTGAACTTCTGCACCAGGCCATCAATCGGCATCTAACGGCGAAATCTCACGCCCGAATCAACCATGTCTTCAATCATTTCGCCGATTGTGACTTCCTCGCGACGCTATACGGACCTTCAGAAGTGTACCGCGGCCACTTGCAGAAGATCTGTGAAGGAGTCAACAAGATGCTGGACGAAGGCAATCTTTGATGAAGACCTCTGaagtctttttattatttaaacatgttttCGGTATTTGTTTAAAATGGAAGATCTCGTGCCTTATTTTTGCGCTAAATTGAAGTACGTTTGTACTTGAAGTCGAATGTTGTCGTATATTTTTATGGTTTACAGTGCAAACGAAGAGCTCCATATTTGAAGGCAATGTGAGATTCAGATATCAGTGGAAATGAAGGACCATTTACAAAGCTTTTTTTCAATGCCGAGAGGAAATATTCAAGCACTGCGAACACAGAATGCACTGGGGGGGGGACACAATATGAAACACTTCATAAGTAATATAAGGAAATGAACCGCAGCATCAGGCGTCTCACTTCCTGAAAAAGGACATTCACTCTGAAACCTAAAAGGAAGATGTTTTTGGTTAACTTTAACCCCTGTGATTTCTAAACTTGATCATATACAGAGCTGTGGCTGGAAAAATCGTTAAAGAAATCGATTTTCAAAAGATATCGTGATTCTCTCGTATACTTTACAAACTGCTGTACTCTGCGACCTAGAGCgtcatctgttgttaaaaactagccaagagggTCATCCGCTGTTCCAAACTAGCGTacagcaccatctgctattaaaaaactAGCATAGATCGCCATATGAGGCTAAAAACTAACCTACAGCTTCatttgctgttcaaaactagcctagagcgtcatctgctgtttaaaactagccttgagcgtcagctgctgtttaaaactagtcttgagcgtcatctgctgttcaaaactagtcttGAGCGTCTTCTGCTGTTCAAAATTTGTCttgagcatcatctgctgttcaaaactagccttcAGCctcatctgctattaaaaaaactAGTGTAGATCACCACCTGCTGCTATAAACCTaatctagagcaccgtctgctgttaaaaactagcctagagcgtcatctgctgttcaaaactagcatacagcaccatctgctGTTAAAAATTAGCCTTGAGCGTTATCTGCTATTCAAAACTAGCATACAGTGCCATGTGCTATTTAAAAACTAGCGTAGATCGCCATCTGCTGCTAACTAACCtatagcactgtctgctgttaaaaactagccacttcatctgctgttcaaaactagcatacagcaccatctgctattaaaaaaactAGCATAGATCACCTTCTGAGGCTAAAAATTAGTCTAGATCGCCGTCTTCTGTTTAAAACTAGCATacagcaccatctgctattaaaacaAACTAGCATAGATCGCCTTCTGAGGCTAAAAATTAGCCTTGAGCGttatctgctgttcaaaactagcataCAGTGCCATCTGCTATTTAAAAACTAGCGTAGATCGCCATCTACTGCTAAAAAACTAACCTATAGCACCgtttgctgtttaaaactagcatacagcaccatctgctattaaaaaaaactagcatagaTCGCCTTCTGAGgctaaaaactagtctagatcGCCGTCTTCTGTTCAAAACTAGCATacagcaccatctgctattaaaaaactAGCATAGATCGCCTTTTAAAGCTAAAAATTAGTcttgagcgccgtctgctgttaaaaactagccttgagcgtTATCTGCTGTTCAAACCTAGCATACagtgccatctgctattaaaaaactAGCGTAGAtcgccatctgctgctaaaaactaacctagagcactgtctgctgttaaaaactagcctagagcgccgtctgctgttcaaaactagcatacagcaccatctgctatttaaaaactagcatagatcGCCTTCTGAGGCTAAAAACTAGtttagagcaccgtctgctgttcaaaacgaGCATATATCACCATCTGTTGTTCAGAATTAGCATACAGCCATGTCTGCTTTTTGAAACTAAGCTCATAATCAGTTCAAGAGAGAATagcgatgcattttgaaaatcgcAGAATCGATTTCTCCCCCAATTTTTCCCCACAGCTCTAGTCCTATAGTGATttatattag

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-695 Predicted to be involved in negative regulation of TOR signaling. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be active in cytoplasm. Is expressed in otic vesicle; pectoral fin; pharyngeal arch; and pronephros. Orthologous to several human genes including TNFAIP8L1 (TNF alpha induced protein 8 like 1).

Ensembl:

ensembl_id ENSDART00000124889

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040972 lncRNA downstream 9512 5140530 ~ 5145022 (-) True XLOC_020777
TCONS_00040970 lncRNA downstream 91613 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040965 lncRNA downstream 147804 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00042305 lncRNA downstream 276788 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00042304 lncRNA downstream 300719 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042306 lncRNA upstream 96161 5267523 ~ 5274962 (-) True XLOC_020780
TCONS_00042307 lncRNA upstream 141609 5312971 ~ 5315485 (-) False XLOC_020781
TCONS_00042308 lncRNA upstream 141609 5312971 ~ 5315544 (-) False XLOC_020781
TCONS_00042309 lncRNA upstream 141609 5312971 ~ 5315577 (-) False XLOC_020781
TCONS_00042310 lncRNA upstream 141609 5312971 ~ 5315582 (-) False XLOC_020781
TCONS_00040968 mRNA downstream 54710 5056288 ~ 5099824 (-) False XLOC_020775
TCONS_00040969 mRNA downstream 54710 5056290 ~ 5099824 (-) False XLOC_020775
TCONS_00040967 mRNA downstream 99761 5036179 ~ 5054773 (-) True XLOC_020774
TCONS_00040966 mRNA downstream 102845 5036179 ~ 5051689 (-) False XLOC_020774
TCONS_00040964 mRNA downstream 147733 4999256 ~ 5006801 (-) False XLOC_020773
TCONS_00040975 mRNA upstream 62034 5233396 ~ 5252005 (-) False XLOC_020779
TCONS_00040976 mRNA upstream 62038 5233400 ~ 5252012 (-) True XLOC_020779
TCONS_00040977 mRNA upstream 149053 5320415 ~ 5323482 (-) True XLOC_020782
TCONS_00040978 mRNA upstream 261731 5433093 ~ 5441893 (-) True XLOC_020783
TCONS_00040979 mRNA upstream 312226 5483588 ~ 5518117 (-) True XLOC_020785
TCONS_00040947 other downstream 255240 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 255240 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 255418 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 841416 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1473809 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 538641 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 573941 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 574843 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 576239 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 699673 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_10958494_10960930.mRNA True 3310 mRNA 0.41 3 CI01000030 10957157 ~ 10962204 (+)