RNA id: TCONS_00042300


Basic Information

Item Value
RNA id TCONS_00042300
length 1184
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id XLOC_020756
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4733007 ~ 4735337 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatccttctGTCAGTATTAAACGTTATACAATatattgcattaataaaatcaGACTCAATAAAATCCCAACAACCAAATATGTAAAATTCATCCTCAGAGAAACAATCGCAGGTCATTTTAAGACTAAGAATAAACAGagtaggacacacacacacacacagctttcagACAAAAGGCTCAGGTTATGGCTATGGTGCAAATAAATGTACGCTAGTTGTGTGAATGTactttaaacaatattaatttccAGCACTATTCAGAATAGAAAAAATGCTTCACCCTCAGTACATGGGGCGAATTTATTATTAAGAAAAATCATGGTCCTCAAATCAAAAAAATGTCCTCAAATCTACACTTTTCAAGCAAAAATCATCAGTTTTGTAGCTTGATATAGCAGTGCTCAACAAAAAAAGTGCCTCTTACAAAACCACAAGCTCCAGTAGTAAAATCACAAACACAAATGGATATTTCACCACAAGATGGCGCTAAAAGTCTTTTCTAGATATCCACCGATGCCTGTTCTAGAAAAACAAGAGCATCTGCAGACAAGTCACAGATTTTCACACAACTTAAACGACTAACATCTCCAAATTAACCCTATGAGAAGTACTACAAAAGGTGCATCTACATGTAGTCACTCTCAGAAGAGTTTATATTTCTGTTCCATACTGAACAGTAGTAGCACTTTAGTTTGAACAGCATTCATTACAGTTCAACAATTTAATACTTCACGGCCCAGTtgcacaaacagggcttagattaggccaggactaggccttagttaaattacACTATTTAAGTCACATTTATAAAAAAGCccttagaaaaaatatattactggtgtgcccctggagacaaaaaatgacactgacgtattttaagacatctcactgCAAGATGCAGCTTAAACATTctatttaatcttgactagccttaaacctggTTTGTGAAAGCAGGGGCACATGTGTTCATGAATCATTTTAATGCacaccttttaatttttttaaagtattactaaaGTGCCAATTAgactcattttaaacaaataaaagagtTCACTTTGTATGGATTTCGAACACACTGTAATGGTAACAacataaattgtattatttattatagttatgAAACCAAAATATGAAGTTAAGAGTTAAACCTTGACAAACAAGAAAGCTAAGAAAGTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042299 lncRNA downstream 846323 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042298 lncRNA downstream 991723 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042297 lncRNA downstream 1385123 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00040911 lncRNA downstream 1580861 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042296 lncRNA downstream 1840461 2889663 ~ 2892546 (-) True XLOC_020738
TCONS_00042301 lncRNA upstream 9770 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042302 lncRNA upstream 46970 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042303 lncRNA upstream 84075 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042304 lncRNA upstream 117725 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042305 lncRNA upstream 141767 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00040935 mRNA downstream 83769 4594465 ~ 4649238 (-) True XLOC_020755
TCONS_00040934 mRNA downstream 88523 4524367 ~ 4644484 (-) False XLOC_020755
TCONS_00040933 mRNA downstream 293696 4408643 ~ 4439311 (-) True XLOC_020754
TCONS_00040932 mRNA downstream 325136 4315256 ~ 4407871 (-) True XLOC_020753
TCONS_00040931 mRNA downstream 334938 4313605 ~ 4398069 (-) False XLOC_020753
TCONS_00040936 mRNA upstream 99 4735436 ~ 4742866 (-) True XLOC_020757
TCONS_00040937 mRNA upstream 9768 4745105 ~ 4760187 (-) False XLOC_020758
TCONS_00040938 mRNA upstream 27141 4762478 ~ 4769140 (-) True XLOC_020759
TCONS_00040939 mRNA upstream 37523 4772860 ~ 4778018 (-) False XLOC_020760
TCONS_00040940 mRNA upstream 41123 4776460 ~ 4780010 (-) False XLOC_020760
TCONS_00040930 other downstream 419889 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1052282 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3502985 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3573258 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 3915600 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040947 other upstream 84073 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 92619 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 163249 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 974666 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 1009966 5745303 ~ 5748548 (-) False XLOC_020795

Expression Profile

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