RNA id: TCONS_00040937


Basic Information

Item Value
RNA id TCONS_00040937
length 4049
RNA type mRNA
GC content 0.41
exon number 10
gene id XLOC_020758
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4745105 ~ 4760187 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATCTCCACGCGCGCTCATTCAGGACGCTGTTATTCGCGTGGTCTCGCGCTCAGACACAATGCTGACGATAACTCTGAAGACCCTCCAGCAGCAGACGTTTAAAGTGCAGATAGATGAGGAACTGACGGTAAAGGCTCTTAAAGAGAAGATAGAGGAAGAAAAGGGGAAAGATGGTTTTCCAGCGGTCGGTCAAAAACTAATCTATGCAGGCAAAATTTTGAATGACGATATACCTCTGAAAGAATACAAAATAGATGAGAAGAATTTTGTTGTGGTGATGGTTACAAAGCCAAAATCTGCAGCGTCGCCACAAACTCCCACTCCTGTACCAGTGTCCGAAACCCCCACACATCAACCCACGACTCCTGTTGCGCCTCCTAATGCCTCCATAGTGCCTGAAACGACCCCTGATCCTGCTCCTGTAGAACCAGCTGCATCAGTGGAGCCGATTGACCCACCCGtcacagcgccccctgctgcatCGGAGGATACTGTAGAAACAACTGAACCCGTTAGCGCTACTCCTGCTCCAGTCGTAGAAGAGGAGATCCAGGGCCAAGAGGAGCAGGCCATCGCCCAATCAGAGGCCAGCCTCACAGATGAATTGAGTCTTTTAGAAGCAGCTGCATCGATACTAGTTACAGGTCAAGCGTATGAGAATTTGGTGACGGAAATCATGTCGATGGGTTATGAGAGGGAACAGGTGATCGCTGCTTTAAGAGCAAGTTTCAACAACCCGGACAGAGCCGTGGAGTACCTACTTACGGGTATTCCAGCAGAGTCAGAGCAGCCTCCACAGGAAGTAGTTCGACCCACACCCTCGTCCAACCCGACTCCTCCAGCACCACAGAGAGCTCAGCCTCCACCTGCCGCCGCCGGTGCAGAGTCTGGCGGTGCGCAGGCATCTGCAAACCCATTGGAGTTCCTGAGGCACCAGCCGCAGTTTCAACAGATGCGGCAGATCATCCAGCAGAACCCATCGCTTCTGCCTGCACTGCTGCAGCAGCTCGGCCGAGACAACCCACAACTTCTGCAGCAAATCACGCAGCATCAGGAGCGGTTTGTGCAGATGTTGAACGAGCCTGAAGCTGAAGCTCCCGCTGCACCACAGACCAACTACATACAGGTCACACCCCAGGAGAAAGAGGCCATCGAGAGGTTAAAAGCTCTGGGGTTTCCTGAAGGTCTCGTCATTCAAGCGTACTTCGCCTGCGAGAAGAACGAGAACCTCGCGGCAAACTTTCTGCTTCAGCAGAACTTTGACGACGAATGAACGTTATGACGGCGGAGAAAGTGAAACCTCTAggccacatgtgtgtgtgtgtgtgtgagtctgaatGTGAACAAGTAGGAAGTCGACTGGTCTTCCATGATGATTGTCATGGAGTTTAAACTGAAGCCATGATGTGACGTTAAATCAGCACAGCTTTTATTTTGATAGATATATAGCCGATCCTCTGCGATGAGGAGTCTGTTGTCTGTCTGGATTCTGCTGCTATTAATGCGTTGTGTCGATTGAGGTTTTATTTATCGCAGTTAAAACCCTGCCAAAAAAACACATCATCATTCATTTCACGTTTTTCGAGATGATTTAGTCAAGGTAGATGGCAAATTTAGTTAATCACCGACGAAAATTACTTTTTGAGGAATAGATGTACAACTTTTCAGCATATGATTTTTTGTAAAccattttttgttttgcatttttctcCACTGGAATAATTATGCAACATAATTTTTTCGATTGcagtattaataatagtattaatgatCCTTTTAACTCTATTTAGTTGCCATTTAGAGTTTCTCGCCTATAACATTGACTTTCATCATTTCACAGCccatttttgtttggttttctgCAGTGGAGtagttatttttcattttgtttagccgacgttaaaataaagaaatagttcacccaaaattaataattctgtcatcatttatttacactCCGATCAGCCAAACatgtttcagtttctttcttatATTGAACACAAAcatcatttcaaaacattttggaaaccagtaaccactgacttccatagtatttctttaATATGCTCTTGACATCAGTGACTACCGGTTTCAACGACTTttgtgttcaattaaaaaaaaagaagaaacattagagccacttgagggcgagtaatttttatttgatttttttgggtgaactatcccattaaataTGGCATCTACTCTTAGAAAATGAATGCCatgttacatatttttaaatcatttttatgcaTATATCTGTCTGCTAGATAAAACAGAACTTTTGTTTAGTTGATGCCAACAAACTACACTAATTGTTCAATGTTATACCATTCATAATAGAGATAAACCTAATGTTGGTGTTTTTAAACCCATGCTCTAAGACAGAATTGTCAGTTATGTCTACAACACTGACAGACATCATTGATAGGCGAGTTGAGATGTGACAATCCAGTTATAAAACTAAGTCCAAGTTATGTTTACTGTCTATATTTCCCATGTCAAACCAGTTCAGTGTGCAGTAGAAACTGATTGAGAGTCGGTTTTGTATGGAGCCCGAAATGCTGCAACAGTGGTAGGCTGTGTTTTATGTAGTGAAGCAACTGAATGTGGTCGAGTGTCTCTGAAACCTCATGAAAATATGCATATGTGTCATTTGAAAGAGTTGGTTTATCTGAACATTTAAAATGGAAGTTTACTTACCCAGGTGTTAAAATTCACTGATTTCCTTTTCCTCAAAATGAGCTGGATAAGCTATTAAAAATGACAGAACGATCCCGTGCCGTGTATTATACGCTTTCAAGAGATAAACGATAGTGTTTGGTAAAAATAAGACCGAATTAGGCTACCGTTTAACGGAAATACTGATTTTGACCGTTTCTCTGTAAGTGTGCGTTCACGAGAAGAGCGCGCGTCTTTCCGCCTCAGAAATAGCAAACAGTGCACCGCGAAGATGGATTAATGTGAGTTTGAGTACAACGTACAAAGCTTAAAAACCGACGAAAATCATCCTAGAAAGAGACGAAAAACATCTGCGTTTAGTCAAAGAGATGATTATCTCCAGaacgaagaaaaaaaactaaGGCAGCTGACAGGTGAATACGCTGCCTTGCGACGAAAACCACGGATATATTAACTTCAGACGAAGTAAGAACACGgtatataaattgtgttttgtgtcAGCTTTTTACTCCTTTTGATTATCAAAACTCCGGCTAGTTTTAGTGATTTGCCGCGCTCAGGGTCTCGTGAACGCGCAGTCACACTGACGGGCACGGTGGTTTTTCCTCAAATAATACAAGAAATCTCGGTTTGTTTTTTAGTAAACCTTGTCGTATACTTAAACAAGTATTAAAATATTCGACACGTCTCGCGTGGAGTCATTCTAATACATTTgcgtctttaaaaaaaatatttattatgtggACGAGCGAGTGACaggattttaaaaacaattccCTTCGTGTGGTACTTGAGGAACTTCATACGGCAATTAAACAACACCCGGGCAAGTAAACgatgttttaaattgttatttttggtGAACTAGTCCTTGAATATTTGTACATATTGAAGTGAAGGAGTAAACAGTGTTGTGTTGGTGTCTGTTGTAAACTTAACAGTGCCAAACATAATCAGAAACTGGAAATGGACAACATTACAGATATATCTGCAAGCATCACAGTGCAATGCTTCAAGTGGTTGCAGAATGcatatatattttcttatataAATGATGTGTGCTGCTCCTATGGTATTGGTTTGTATAGTGCTGGAAGGATAGGCCTATTTTTATGGATTGCGTTTGAAAATGTTTTGGGTGTTTTGACAGGTACAGGCGTCCTGTTTACACATGTGATGCAGTTTTGATTTTTCATTTCAgcattttgtataattttgttcGTCTTGAGGGAGTTGATGTGTGAAGAAAGAAAACGTGTATAAGAGTTTGGTCTTAAGTGCATCACCGCAAAAGAGTTTGCTGAGTGGTTTATGAATGTATTGTTTCAGTGGTGTGTGAaataaattgcttttaaaaagctTCAA

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function
GO:0003684 damaged DNA binding molecular_function
GO:0070628 proteasome binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-160 Predicted to enable polyubiquitin modification-dependent protein binding activity; proteasome binding activity; and ubiquitin binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol and nucleoplasm. Orthologous to human RAD23A (RAD23 homolog A, nucleotide excision repair protein).

Ensembl:

ensembl_id ENSDART00000081969

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042300 lncRNA downstream 9768 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042299 lncRNA downstream 858421 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042298 lncRNA downstream 1003821 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042297 lncRNA downstream 1397221 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00040911 lncRNA downstream 1592959 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042302 lncRNA upstream 22120 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042303 lncRNA upstream 59225 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042304 lncRNA upstream 92875 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042305 lncRNA upstream 116917 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00040965 lncRNA upstream 245149 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00040936 mRNA downstream 2239 4735436 ~ 4742866 (-) True XLOC_020757
TCONS_00040935 mRNA downstream 95867 4594465 ~ 4649238 (-) True XLOC_020755
TCONS_00040934 mRNA downstream 100621 4524367 ~ 4644484 (-) False XLOC_020755
TCONS_00040933 mRNA downstream 305794 4408643 ~ 4439311 (-) True XLOC_020754
TCONS_00040932 mRNA downstream 337234 4315256 ~ 4407871 (-) True XLOC_020753
TCONS_00040938 mRNA upstream 2291 4762478 ~ 4769140 (-) True XLOC_020759
TCONS_00040939 mRNA upstream 12673 4772860 ~ 4778018 (-) False XLOC_020760
TCONS_00040940 mRNA upstream 16273 4776460 ~ 4780010 (-) False XLOC_020760
TCONS_00040941 mRNA upstream 16273 4776460 ~ 4868321 (-) True XLOC_020760
TCONS_00040942 mRNA upstream 22100 4782287 ~ 4813345 (-) False XLOC_020761
TCONS_00040930 other downstream 431987 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1064380 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3515083 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3585356 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 3927698 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040947 other upstream 59223 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 67769 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 138399 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 949816 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 985116 5745303 ~ 5748548 (-) False XLOC_020795

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_11362386_11380216.mRNA False 4461 mRNA 0.47 22 CI01000030 11362114 ~ 11380772 (+)