Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00040933 |
| length | 5079 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 17 |
| gene id | XLOC_020754 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 4408643 ~ 4439311 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006325 | chromatin organization | biological_process |
| GO:0010390 | histone monoubiquitination | biological_process |
| GO:0006954 | inflammatory response | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0002088 | lens development in camera-type eye | biological_process |
| GO:0060729 | intestinal epithelial structure maintenance | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0010216 | maintenance of DNA methylation | biological_process |
| GO:0016574 | histone ubiquitination | biological_process |
| GO:0031100 | animal organ regeneration | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0044027 | hypermethylation of CpG island | biological_process |
| GO:0000791 | euchromatin | cellular_component |
| GO:0000792 | heterochromatin | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005657 | replication fork | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0044729 | hemi-methylated DNA-binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0035064 | methylated histone binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2039 | Predicted to enable several functions, including hemi-methylated DNA-binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Acts upstream of or within several processes, including animal organ development; hypermethylation of CpG island; and intestinal epithelial structure maintenance. Located in cytoplasm and nucleus. Is expressed in several structures, including brain; eye; liver; pleuroperitoneal region; and presumptive neural retina. Orthologous to human UHRF1 (ubiquitin like with PHD and ring finger domains 1). |
| ensembl_id | ENSDART00000169317 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00042299 | lncRNA | downstream | 521959 | 3883607 ~ 3886684 (-) | True | XLOC_020750 |
| TCONS_00042298 | lncRNA | downstream | 667359 | 3740586 ~ 3741284 (-) | True | XLOC_020749 |
| TCONS_00042297 | lncRNA | downstream | 1060759 | 3347513 ~ 3347884 (-) | True | XLOC_020747 |
| TCONS_00040911 | lncRNA | downstream | 1256497 | 3147100 ~ 3152146 (-) | True | XLOC_020742 |
| TCONS_00042296 | lncRNA | downstream | 1516097 | 2889663 ~ 2892546 (-) | True | XLOC_020738 |
| TCONS_00042300 | lncRNA | upstream | 293696 | 4733007 ~ 4735337 (-) | True | XLOC_020756 |
| TCONS_00042301 | lncRNA | upstream | 305796 | 4745107 ~ 4746442 (-) | True | XLOC_020758 |
| TCONS_00042302 | lncRNA | upstream | 342996 | 4782307 ~ 4783024 (-) | False | XLOC_020761 |
| TCONS_00042303 | lncRNA | upstream | 380101 | 4819412 ~ 4820146 (-) | False | XLOC_020764 |
| TCONS_00042304 | lncRNA | upstream | 413751 | 4853062 ~ 4853815 (-) | True | XLOC_020765 |
| TCONS_00040932 | mRNA | downstream | 772 | 4315256 ~ 4407871 (-) | True | XLOC_020753 |
| TCONS_00040931 | mRNA | downstream | 10574 | 4313605 ~ 4398069 (-) | False | XLOC_020753 |
| TCONS_00040925 | mRNA | downstream | 494421 | 3910610 ~ 3914222 (-) | False | XLOC_020751 |
| TCONS_00040934 | mRNA | upstream | 85056 | 4524367 ~ 4644484 (-) | False | XLOC_020755 |
| TCONS_00040935 | mRNA | upstream | 155154 | 4594465 ~ 4649238 (-) | True | XLOC_020755 |
| TCONS_00040936 | mRNA | upstream | 296125 | 4735436 ~ 4742866 (-) | True | XLOC_020757 |
| TCONS_00040937 | mRNA | upstream | 305794 | 4745105 ~ 4760187 (-) | False | XLOC_020758 |
| TCONS_00040938 | mRNA | upstream | 323167 | 4762478 ~ 4769140 (-) | True | XLOC_020759 |
| TCONS_00040930 | other | downstream | 95525 | 4311803 ~ 4313118 (-) | True | XLOC_020752 |
| TCONS_00040924 | other | downstream | 727918 | 3595268 ~ 3680725 (-) | True | XLOC_020748 |
| TCONS_00040899 | other | downstream | 3178621 | 1229906 ~ 1230022 (-) | True | XLOC_020689 |
| TCONS_00040895 | other | downstream | 3248894 | 1158069 ~ 1159749 (-) | False | XLOC_020686 |
| TCONS_00040885 | other | downstream | 3591236 | 812920 ~ 817407 (-) | True | XLOC_020678 |
| TCONS_00040947 | other | upstream | 380099 | 4819410 ~ 4899294 (-) | False | XLOC_020764 |
| TCONS_00040949 | other | upstream | 388645 | 4827956 ~ 4899294 (-) | False | XLOC_020764 |
| TCONS_00040955 | other | upstream | 459275 | 4898586 ~ 4899116 (-) | True | XLOC_020764 |
| TCONS_00040987 | other | upstream | 1270692 | 5710003 ~ 5713793 (-) | False | XLOC_020792 |
| TCONS_00040991 | other | upstream | 1305992 | 5745303 ~ 5748548 (-) | False | XLOC_020795 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000030_11550703_11555403.mRNA | True | 1319 | mRNA | 0.52 | 9 | CI01000030 | 11550703 ~ 11555596 (+) |
