RNA id: TCONS_00042302


Basic Information

Item Value
RNA id TCONS_00042302
length 718
lncRNA type read_through
GC content 0.39
exon number 1
gene id XLOC_020761
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4782287 ~ 4813345 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagtctctctctacctctggaggtggaatatcaggagaaaaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACTCAACATCTGGACATCAGTCAACTCTGTCCCACATGTTCAGGTACAGCAGAGCTGATATTAGTGGATGGCAGTGCTGATATGAAGCTTTATTGACTGATCTGAGCTCAGTTTGATGTGTTTGTTCCTCAGGCTCTGTTCACTGCTGTGGTCCTACTGAAGCTGCGATCCGATTGGTCCTCTCTGCTCTGGTGGGCGTGGCTACTGTCAttattgtgctttatgacatcagATCCAGAAGAGCTGAACAAGATCAAGCACATATTCACGCATCACAAACCTGAATGATGATGTCAGAGAACTGCTTTCAGTCATTTCAGCTTCATTTATTTTGAAGATTTTAGATGAACCTGATGGTTCTGATGCAGCTCATGTGAGGGTTTGACATTAATACAGCAGCAGACTTCAAATACAAAGCTTTGCTTTCATTTATTTCAGTACAACAGGCTTTACTAATGAACATTTTATATATGATTtaatttttcatgtttgttttgtaGTGTTACTATTTTACAGATTcagtttgatttattgtttatatttctcTAAAATAAGACACAGATCTTACTTCACTGTGCATTTGTCAGATGTATTTGCTTGTCTTCATCAATAAAGTTTTCTCTGTCTAAATGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042301 lncRNA downstream 35865 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042300 lncRNA downstream 46970 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042299 lncRNA downstream 895623 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042298 lncRNA downstream 1041023 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042297 lncRNA downstream 1434423 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00042303 lncRNA upstream 36388 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042304 lncRNA upstream 70038 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042305 lncRNA upstream 94080 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00040965 lncRNA upstream 222312 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00040970 lncRNA upstream 276861 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040940 mRNA downstream 2297 4776460 ~ 4780010 (-) False XLOC_020760
TCONS_00040939 mRNA downstream 4289 4772860 ~ 4778018 (-) False XLOC_020760
TCONS_00040938 mRNA downstream 13167 4762478 ~ 4769140 (-) True XLOC_020759
TCONS_00040937 mRNA downstream 22120 4745105 ~ 4760187 (-) False XLOC_020758
TCONS_00040936 mRNA downstream 39441 4735436 ~ 4742866 (-) True XLOC_020757
TCONS_00040943 mRNA upstream 620 4783644 ~ 4784658 (-) True XLOC_020762
TCONS_00040944 mRNA upstream 14484 4797508 ~ 4798738 (-) True XLOC_020763
TCONS_00040945 mRNA upstream 16394 4799418 ~ 4812755 (-) True XLOC_020761
TCONS_00040946 mRNA upstream 36386 4819410 ~ 4878012 (-) False XLOC_020764
TCONS_00040948 mRNA upstream 44932 4827956 ~ 4878012 (-) False XLOC_020764
TCONS_00040930 other downstream 469189 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1101582 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3552285 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3622558 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 3964900 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040947 other upstream 36386 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 44932 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 115562 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 926979 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 962279 5745303 ~ 5748548 (-) False XLOC_020795

Expression Profile

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