RNA id: TCONS_00040945


Basic Information

Item Value
RNA id TCONS_00040945
length 1183
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_020761
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4782287 ~ 4813345 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGGGAGATTCAGTCACTCTAAACTCTGAACTCACTCAACTGAAGAATAGTGATCGGATTCATTGGATGTTTGGAGATGAAGACACTTTAATAGCAGAAATCAATAAACGACCCAGATTCTCTGTATTTGATGATGTTCTTGTTAagagattcagagacagactgaaactggacaataaaactggatctctgaccatcacagaCACCAGAACTGAACATGCTGGAGATTATAAACTTTGGTTCAACAATGAGAGAATAAGGAGTTTCATTCTCACTGTTGCTCTGCCTGTTCCTGTCCTCATCCTCAACTCTTCTCAATGTCcttcatcctcatcttcatcagtGCAGTATTGTTCAGTGctgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggagaaaaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACTCAACATCTGGACATCAGTCAACTCTGTCCCACATGTTCAGGTACAGCAGAGCTGATATTAGTGGATGGCAGTGCTGATATGAAGCTTTATTGACTGATCTGAGCTCAGTTCAATGTGTTTGTTCCTCAGGCTCTGTTCACTGCTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGTTCTGGTGGGCGTGGCTACTGTCAttattgtgctttatgacatcagATCCAGAAGAGCTGAACAAGATCAAGCACATATTCACGCATCACAAACCTGAATGATGATGTCAGAGAACTGCTTTCAGTCATTTCAGCTTCATTTATTTTGAAGATTTTAGATGAACCTGATGGTTCTGATGCAGCTCATGTGAGGGATTGACATAAATACAGCAGCAGACTTCAAATACAAAGCTTTGCTTTCATTTAGATCAGTACAACAGGCTTTACTTATGAACATTTTATATATGATTGaatttttcatgtttgttttgtaGTGATACTATTTTACAGATTcagtttgatttattgtttatatttctcTAAAATAAGACACAGATCTTACTTCACTGTGCATTTGTCAGATGTATTTGCTTGTCTTCATCAATAAAGTTTTCTCTGGCTAAATGTAAAGTCTCTTCAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000191739

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042302 lncRNA downstream 16394 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042301 lncRNA downstream 52976 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042300 lncRNA downstream 64081 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042299 lncRNA downstream 912734 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042298 lncRNA downstream 1058134 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042303 lncRNA upstream 6657 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042304 lncRNA upstream 40307 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042305 lncRNA upstream 64349 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00040965 lncRNA upstream 192581 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00040970 lncRNA upstream 247130 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040944 mRNA downstream 680 4797508 ~ 4798738 (-) True XLOC_020763
TCONS_00040943 mRNA downstream 14760 4783644 ~ 4784658 (-) True XLOC_020762
TCONS_00040940 mRNA downstream 19408 4776460 ~ 4780010 (-) False XLOC_020760
TCONS_00040939 mRNA downstream 21400 4772860 ~ 4778018 (-) False XLOC_020760
TCONS_00040938 mRNA downstream 30278 4762478 ~ 4769140 (-) True XLOC_020759
TCONS_00040946 mRNA upstream 6655 4819410 ~ 4878012 (-) False XLOC_020764
TCONS_00040948 mRNA upstream 15201 4827956 ~ 4878012 (-) False XLOC_020764
TCONS_00040950 mRNA upstream 49882 4862637 ~ 4864036 (-) True XLOC_020766
TCONS_00040951 mRNA upstream 55693 4868448 ~ 4872418 (-) True XLOC_020767
TCONS_00040952 mRNA upstream 63879 4876634 ~ 4880603 (-) False XLOC_020764
TCONS_00040930 other downstream 486300 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1118693 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3569396 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3639669 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 3982011 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040947 other upstream 6655 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 15201 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 85831 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 897248 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 932548 5745303 ~ 5748548 (-) False XLOC_020795

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU432740 True 612 lncRNA 0.41 2 CI01000186 653803 ~ 654892 (-)