RNA id: TCONS_00042301


Basic Information

Item Value
RNA id TCONS_00042301
length 1336
lncRNA type sense_over
GC content 0.38
exon number 1
gene id XLOC_020758
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4745105 ~ 4760187 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTAAAATTCACTGATTTCCTTTTCCTCAAAATGAGCTGGATAAGCTATTAAAAATGACAGAACGATCCCGTGCCGTGTATTATACGCTTTCAAGAGATAAACGATAGTGTTTGGTAAAAATAAGACCGAATTAGGCTACCGTTTAACGGAAATACTGATTTTGACCGTTTCTCTGTAAGTGTGCGTTCACGAGAAGAGCGCGCGTCTTTCCGCCTCAGAAATAGCAAACAGTGCACCGCGAAGATGGATTAATGTGAGTTTGAGTACAACGTACAAAGCTTAAAAACCGACGAAAATCATCCTAGAAAGAGACGAAAAACATCTGCGTTTAGTCAAAGAGATGATTATCTCCAGaacgaagaaaaaaaactaaGGCAGCTGACAGGTGAATACGCTGCCTTGCGACGAAAACCACGGATATATTAACTTCAGACGAAGTAAGAACACGgtatataaattgtgttttgtgtcAGCTTTTTACTCCTTTTGATTATCAAAACTCCGGCTAGTTTTAGTGATTTGCCGCGCTCAGGGTCTCGTGAACGCGCAGTCACACTGACGGGCACGGTGGTTTTTCCTCAAATAATACAAGAAATCTCGGTTTGTTTTTTAGTAAACCTTGTCGTATACTTAAACAAGTATTAAAATATTCGACACGTCTCGCGTGGAGTCATTCTAATACATTTgcgtctttaaaaaaaatatttattatgtggACGAGCGAGTGACaggattttaaaaacaattccCTTCGTGTGGTACTTGAGGAACTTCATACGGCAATTAAACAACACCCGGGCAAGTAAACgatgttttaaattgttatttttggtGAACTAGTCCTTGAATATTTGTACATATTGAAGTGAAGGAGTAAACAGTGTTGTGTTGGTGTCTGTTGTAAACTTAACAGTGCCAAACATAATCAGAAACTGGAAATGGACAACATTACAGATATATCTGCAAGCATCACAGTGCAATGCTTCAAGTGGTTGCAGAATGcatatatattttcttatataAATGATGTGTGCTGCTCCTATGGTATTGGTTTGTATAGTGCTGGAAGGATAGGCCTATTTTTATGGATTGCGTTTGAAAATGTTTTGGGTGTTTTGACAGGTACAGGCGTCCTGTTTACACATGTGATGCAGTTTTGATTTTTCATTTCAgcattttgtataattttgttcGTCTTGAGGGAGTTGATGTGTGAAGAAAGAAAACGTGTATAAGAGTTTGGTCTTAAGTGCATCACCGCAAAAGAGTTTGCTGAGTGGTTTATGAATGTATTGTTTCAGTGGTGTGTGAaataaattgcttttaaaaagctTC

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function
GO:0003684 damaged DNA binding molecular_function
GO:0070628 proteasome binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042300 lncRNA downstream 9770 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042299 lncRNA downstream 858423 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042298 lncRNA downstream 1003823 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042297 lncRNA downstream 1397223 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00040911 lncRNA downstream 1592961 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042302 lncRNA upstream 35865 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042303 lncRNA upstream 72970 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042304 lncRNA upstream 106620 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042305 lncRNA upstream 130662 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00040965 lncRNA upstream 258894 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00040936 mRNA downstream 2241 4735436 ~ 4742866 (-) True XLOC_020757
TCONS_00040935 mRNA downstream 95869 4594465 ~ 4649238 (-) True XLOC_020755
TCONS_00040934 mRNA downstream 100623 4524367 ~ 4644484 (-) False XLOC_020755
TCONS_00040933 mRNA downstream 305796 4408643 ~ 4439311 (-) True XLOC_020754
TCONS_00040932 mRNA downstream 337236 4315256 ~ 4407871 (-) True XLOC_020753
TCONS_00040938 mRNA upstream 16036 4762478 ~ 4769140 (-) True XLOC_020759
TCONS_00040939 mRNA upstream 26418 4772860 ~ 4778018 (-) False XLOC_020760
TCONS_00040940 mRNA upstream 30018 4776460 ~ 4780010 (-) False XLOC_020760
TCONS_00040941 mRNA upstream 30018 4776460 ~ 4868321 (-) True XLOC_020760
TCONS_00040942 mRNA upstream 35845 4782287 ~ 4813345 (-) False XLOC_020761
TCONS_00040930 other downstream 431989 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1064382 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3515085 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3585358 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 3927700 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040947 other upstream 72968 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 81514 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 152144 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 963561 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 998861 5745303 ~ 5748548 (-) False XLOC_020795

Expression Profile

//