RNA id: TCONS_00040938


Basic Information

Item Value
RNA id TCONS_00040938
length 1712
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_020759
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4762478 ~ 4769140 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTTGGACTCCTCACTCGTGGTCTCCTCCGATTGGCTGCGCGTCCGGCCAATGATCCTCGGCCATCTGTGCAGGAACACTACTGAGCCATATTTTAGTGACCATTAGCTCGAGCGGCGTTCATTATTATATCAGGATCTTCGTCAAAAGCAGGTCCTTTAACCGTGCAGAGATGCGGATCACTGCTGCAGTGTGCTTTATTTCTGCACTGGCCTTCATTGCGCACGCAGACGTCTATTTTAAAGAGCAGTTTCTGGACGGAGATGGCTGGAAAAGCAGGTGGGTGGAATCCAAGCACAAGTCCGACTACGGCCAATGGAAACTGACCTCAGGGAAATTCTACGGTGATGCTGAGCTTGATAAAGGTCTGCAAACAAGTCAAGATGCTCGGTTTTATGCTTTATCCAGTCGCTTTGATTCATTTAGCAATGAGGGCAAAACATTAGTGATCCAGTTTACGGTGAAACACGAGCAGAAGATCGACTGTGGCGGTGGGTATGTGAAAGTCTTCCCCGCCGAGATGGACCAGACCGAAATGCATGGTGAATCGCAGTATTACATCATGTTCGGGCCTGACATCTGTGGCTACAGCACCAAAAAAGTCCACGTCATTTTCAACTACAAAGGCCAAAACCACCTAATCAAGAAAGACATCAAATGCAAGGACGATGAACTCACACACCTGTACACACTGATTCTGCGACCAGACCAAACTTATGAAGTGAAAATCGACAATGAGAAAGTGGAATCGGGTTCCTTGGAGGAAGACTGGGATTTCCTTCCTCCCAAAAAGATCAAGGATCCAGAGGCCAAAAAGCCAGATGATTGGGACGACAGGGCGAAAATCGACGATCCTGAAGACACTAAACCCGAGGATTGGGACAAACCTGAGAATATCCCTGACCCTGATGCCAAGAAACCAGACGACTGGGATGAAGACATGGATGGAGAATGGGAACCTGCAATGATCCCAAACCCAGAGTACAAGGGTGAGTGGAAACCCAAACAGATTGACAACCCCTCCTACAAAGGCACCTGGGTTCATCCTGAAATCGACAACCCAGAGTACGCGGCAGATGACGCCATTTATAAGTTTGACAGCATTGGTGTTCTGGGACTGGATCTTTGGCAGgtaAAATCTGGAACAATCTTTGACAACTTTTTGATCACCGATGATGTCGAGGAGGCTGAGAAATTTGGTACAGATACATGGGGTGCGACAAAGGGACCAGAGAAGAAAATGAAGGACCAGCAGGAAGAGGAAGAACGGAAAAAGCGGGAAGAGGAAGAAAAGAGCAAAAAGGATGATAATGAGGAAGATGAAGAGGACGAAGATGAGGATGAGCCAGAGGAGGATGATCATACAGAAGAACCTccagaggaagaagaggagggtGAGGATGATGCGCTCCCTAAAGATGAATTGTAAAGAAGTCTCTTCCTGAATGAGCAGATCTGATGTGGTTCTTAAGTCTTTTTCTTTAAATGAGGTGTATAATTTGACCCCGCCCCCTTTCTAGTCACATGTCGCATCCCTGAATTCAGATTTCTTTTGGTTTTGCTGCTAGAAGCCCCATGTTCATAGTACAACCTGTTAAACTAGACTAATAAATGTTTGGGTTTTCTGTTCGGTCTCGAGTTGCGCAATGGGAAAATTCTAATGTATCATTTGTTGGATTtgcacttttttaaataaatgatttatttttaaa

Function

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000208-17 Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including axis; cardiovascular system; hatching gland; periderm; and polster. Orthologous to human CALR3 (calreticulin 3).

Ensembl:

ensembl_id ENSDART00000165235

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042301 lncRNA downstream 16036 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042300 lncRNA downstream 27141 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042299 lncRNA downstream 875794 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042298 lncRNA downstream 1021194 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042297 lncRNA downstream 1414594 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00042302 lncRNA upstream 13167 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042303 lncRNA upstream 50272 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042304 lncRNA upstream 83922 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042305 lncRNA upstream 107964 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00040965 lncRNA upstream 236196 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00040937 mRNA downstream 2291 4745105 ~ 4760187 (-) False XLOC_020758
TCONS_00040936 mRNA downstream 19612 4735436 ~ 4742866 (-) True XLOC_020757
TCONS_00040935 mRNA downstream 113240 4594465 ~ 4649238 (-) True XLOC_020755
TCONS_00040934 mRNA downstream 117994 4524367 ~ 4644484 (-) False XLOC_020755
TCONS_00040933 mRNA downstream 323167 4408643 ~ 4439311 (-) True XLOC_020754
TCONS_00040939 mRNA upstream 3720 4772860 ~ 4778018 (-) False XLOC_020760
TCONS_00040940 mRNA upstream 7320 4776460 ~ 4780010 (-) False XLOC_020760
TCONS_00040941 mRNA upstream 7320 4776460 ~ 4868321 (-) True XLOC_020760
TCONS_00040942 mRNA upstream 13147 4782287 ~ 4813345 (-) False XLOC_020761
TCONS_00040943 mRNA upstream 14504 4783644 ~ 4784658 (-) True XLOC_020762
TCONS_00040930 other downstream 449360 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1081753 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3532456 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3602729 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 3945071 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040947 other upstream 50270 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 58816 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 129446 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 940863 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 976163 5745303 ~ 5748548 (-) False XLOC_020795

Expression Profile

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