RNA id: TCONS_00040934


Basic Information

Item Value
RNA id TCONS_00040934
length 8607
RNA type mRNA
GC content 0.55
exon number 64
gene id XLOC_020755
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4524367 ~ 4649238 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGAGTGTGGAAGCTGGCCAACGTGGTGCTATGGTGGGCCGCAGTCCATTCGGTGCAAGGGCAAGGAGATGGAGACATCCAGGCCAGCCGATTCACTGGAAAACCTGAGGGGGAGGTGCAGCAGAGGGTCCGGCGAAGGGGCCAGGAGTCCCTCAGGGGGCCCAACGTATGCGGTTCCCGCTTCCACTCCTATTGTTGTCCAGGATGGAAAACGCTTCCTGGAGGGAACCAGTGTATAGTTCCAATCTGTAGGAACTCCTGTGGTGATGGCTTTTGCTCGAGGCCCAACATGTGTACCTGTTCGAGTGGTCATCTTGCCCCTAGCTGTGGTGCGGCTGCTGTCCAGTCCTGCAGCGTCAGATGTATGAATGGTGGGATGTGTAATGAAGACGCCTGCTCCTGTCAGAAGGGATACACAGGAACTCACTGTGGACAACCGGTGTGCGAGAGCGGATGTCAGAACGGCGGCCGCTGCATCGGACCCAACAGATGTGCCTGCGTTTACGGTTTCACCGGGCCGCAGTGCGAGAGAGACTACCGGACTGGACCGTGCTTCACTCAGGTCAACAATCAGATGTGCCAGGGTCAGCTGAGTGGCATCGTGTGCACCAAAACGCTCTGCTGCGCCACCATTGGCCGAGCGTGGGGTCACCCGTGTGAGATGTGCCCTGCCCAACCACACCCCTGCCGGAGAGGATTCATTCCCAACATCCGCACCGGTGCATGCCAAGACGTGGACGAATGCCAGGCCGTCCCGGGACTGTGTGCTGGAGGAAACTGCATCAACACTGTGGGCTCTTATGAGTGCAAATGCCCCGCGGGTCACCGACAGAGTGAGACCAACCAGAAGTGTGAAGACATCGATGAATGTGCAACCATATCTGGAGTGTGTGACGGGGGAGAGTGTACAAACACCGCCGGCAGCTACGTGTGCACCTGCCCACGAGGATACATCACCAGCACAGACGGCTCCAGATGTGTTGATCATCGGATCGGGACGTGCTTCTCGTCTTTGGCGAACGGCCGCTGTGCGAGTGAACTGTCTGGTCAGTACACCAAGATGCAGTGCTGCTGCGACACAGGCCGCTGCTGGGCCCTCGGACACATACCTGAGATGTGCCCCGTCAGAGGATCCGATGAATACCGGCGTCTGTGCATCCAGAGGCTCCCGTTCGGCACCGGTAACGGCGGCATCATTCATGACGGTAACGGCGGTCTGAACATCGGCGGATATGGAAAAGGGCCTTCGCAGAACGGAAACGGCGGGGGGGGATACATTTATGGCAGCGAACACACCTTCACTAACGGCAACGGAAATGGAGGACAGAAGATCCAGATCAGTCAGCTAAATGAGACCACGATCGACGTCTGCAAACACTTCACAAATCTGTGTCTGAACGGCCGCTGCATCCCAACACCGACGAGTTACCGCTGCGAATGCAACATGGGCTACAGACAAGACGTGCGCGGAGAGTGTATCGATGTGGACGAGTGCGTCAGTAACCCGTGTGTGAACGGAGACTGTGTCAACACTCAGGGGTCGTATCACTGCAAATGTCACGAGGGTTATCAGGGAACGCCCACCAAACAGGCCTGCATCGACATCGACGAGTGTATTGTGAACGGCGTTATGTGTCGTAACGGACGCTGCGTGAACACAGATGGAAGTTTCCAGTGCATCTGCAATGCTGGCTTCGAGATCAGCCCTGATGGGAAAAACTGCATCGATCATGATGAATGTGCCACTACCAACATGTGCCTCAATGGAATGTGCATAAACGAAGACGGCAGCTTCAAGTGCATCTGCAAGCCTGGGTTTGCATTGGCGCCCAATGGACGCTACTGTACTGACATTGATGAATGCCACACCTCCGGCATCTGTATGAACGGCCGCTGCGTGAACACTGAGGGCTCTTTCCGCTGTGAGTGTCCTCCAGGTCTAGCCATCGATGTGGACGGACGCGTCTGCGTGGACACCCACATGCGCACCACCTGCTACGGTGCAATAAAAATGGGCGTATGTTCACGACCTTTCCCTGGCGCAGTCACAAAGTCCGAATGCTGCTGCGCCAACCCTGAACATGGTTTCGGAGAGCCTTGCCAACCCTGCCCAGCGTTCAACTCCGCCGAGTTCCAGGCGGTGTGCAGCAGTGGACCTGGGATCACTACAGACGGACGAGATATAAACGAATGCGCTTTGGATCCAGACATATGTCAAAATGGGATTTGCGAGAATTTGCGCGGGAGCTACCGTTGCATCTGTAATATCGGTTATGAGTCTGATGCTAGTGGGAAGAACTGCGTGGACATTAATGAGTGTTTGGTGAACCGCTTGTTGTGTGACAACGGCATGTGTAGAAACACACCTGGAAGCTACACCTGTTCCTGCCCCAAAGGATTCTCCTTCAAGGCCGACTCTGAGACTTGCGAAGACATCAACGAGTGCGACTCCAACCCCTGCATCAATGGCATTTGCCGCAACATAGCTGGTTCCTTCAACTGCGAATGTTCGCACGGCAGCAAGCTGGACTCCACAAACACCGTCTGCGTAGACAGCATGAAGGGGACCTGCTGGCTGAATATCCAGGACGGCCGCTGCGAGGTGAATATAAACGGGGCCACGCTGAAGTCTGAGTGCTGCTCCACGCTCGGGGCCGCCTGGGGAAGCCCATGTGAACGCTGCGAAATCGatcCAGCCTGTTCTAAAGGGTTTGGTCGCATGAAGGGACTTGTATGTGAAGATATCAATGAGTGTGAGGTGTTTCCGGGTGTCTGTACAAACGGCCGTTGTGTGAACACTCAGGGCTCTTTCAGATGTGAGTGTCCTGAGGGACTTACACTGGATGGAGCCGGACGAACATGTGTTGACGTGCGCAGTGAGCAGTGTTATATGAAGTGGGATGAGGACGAATGTGTGGAGCCTTTGCCGGGCCGCTATCGTGTGGACATGTGCTGTTGTACAGTGGGTGCAGCGTGGGGTGTGGACTGTGAGGCCTGTCCAAAACCAAACACTAATGAATTCAAGACTATCTGCCCTCGAGGACCCGGAATCGCCAATCGCGGAGACATTCTGACTGGGAGACCCTTCTACAAAgATGTGAATGAGTGTAAGGTGTTTAGGGGGCTCTGCACTCACGGCACGTGTCGAAACACTATCGGCAGCTTCAAGTGTCGCTGTGATAGTGGTTTCGCCCTGACAATGGAGGAGAGGAACTGCACAGATATCGACGAATGTACGATCTCTCCGGACCTGTGTGgtcatggtgtgtgtgtgaacacacCAGGCAGCTTCGAGTGCGAGTGTTTCGACGGCTACGAGAGCGGCTTTATGATGATGAAAAACTGCATGGacATTGACGAGTGCGAGCGTGACCCACTGCTGTGCCGTGGAGGGACGTGTCTGAACACTGAGGGCAGCTACGAGTGCGACTGTCCTCCAGGACACCAGCTCAGTACTGAGGCCTCTGCTTGTGAAGATGTGAACGAGTGTCAGCTGAGTGACAATCTGTGTAAACACGGTCAGTGTGTGAACATGGTGGGAACATACCAGTGCTCATGTGAAACGGGATACCAGGTGACGCCCGACAGACAGGGCTGTGTGGATATCGACGAGTGCACCATCATGAACGGCGGCTGCGACACACACTGCACAAACTCGGAGGGAAGCTACGAATGCAGCTGCAGCGAAGGATACGCGCTCATGCCTGACCTCAGGACCTGCGCTGACATCGACGAGTGTGAAGACACACCAGATATCTGCGACGGCGGCCAGTGCACGAACATCCCCGGAGAATACCGCTGTCTGTGCTATGATGGTTTCATGGCCTCTATGGACATGAGGACATGCATCGACGTCAATGAATGTGACCTGAACCCTAATATCTGCCTGCACGGTGACTGTGAAAACACTAAAGGATCCTTCATTTGTCACTGTCAGCTCGGATATTTCGTCAAAAAGGGCTCAACTGGATGTACAGATGTGGACGAGTGTGAAATCGGGGCTCATAACTGTGATCTGCATGCGGCGTGTGTGAACGCTCCCGGCAGCTTCAAGTGCCGATGCCGCGACGGCTGGGAGGGAGACGGCATCAAGTGTATCGATGTTGACGAGTGTGTGACAGAGGAGCACAACTGTAACCCGAACGCTGAGTGTTTGAACACACCAGGCTCGTACCGCTGCTCCTGTAAAGAAGGATTCAATGGAGATGGATTCTCCTGCTCTgacatgGACGAGTGTGCGGATAATGTGAATCTGTGTGAGAACGGTCAGTGTTTAAACGCTCCGGGTGGATACCGCTGCGAGTGTGAGATGGGCTTCACTCCAACAGAGGACAGCAAAGCCTGCcaggACATTGACGAGTGCAACTTCCAGAACATCTGTGTGTTTGGATCGTGTCAGAATCTGCCAGGAATGTTCCGCTGTGTGTGTGATTATGGATATGAGCTGGACCGCAGCGGAGGAAACTgcacagACATCAACGAGTGTTTCGACCCGGTGAACTGCATCaacggtgtgtgtgtgaatctgccCGGCAGCTACCTGTGCAACTGTCCTCCAGATTTTGAGCTGAACCCGTCTGGTGTGGGCTGTGTGGACACGCGTGTGGGCAACTGTTTCCTGGATACGTTGGACCGTGGCGATGGCGGGATCTCCTGCAGTGCTGAGATCGGAGTGGGCGTGACCCGCGCATCCTGCTGCTGCTCGCTGGGCGGAGCCTGGGGAAACCCCTGTGAACTCTGCCCATCCGTCAACTCCACCGAGTATAAGACTCTGTGTCCCGGTGGAGAAGGCTTCAGGCCGAACCCCATCACCGTCATCCTGGAGGACATTGACGAGTGTCAGGAGCTGCCGGGTCTCTGTCAGGGTGGAAACTGTGTGAACACGTTCGGCAGTTTCCAGTGTGAGTGTCCCGCCGGATACTATCTCAACGAGGAGACGCGCATCTGCGAAGATATTGATGAATGTACTGCTCACATTGGCATCTGTGGTCCGGGCACCTGCTACAACACACTGGGCAACTACACCTGCGTCTGTCCTCCAGAATACATGCAGGTCAATGGAGGAAACAACTGCATGGACATGAGGAAGAGTGTGTGTTACCGTAACTTCAACGACACCTGTGAAAACGAGCTCTCCTTCAACATGACCAAAAAGATGTGCTGCTGCGCCTACAACGTGGGTAAAGCCTGGAACCGGCCCTGCGAGGCCTGTCCTACCCCCGCCACCTCCGAATACCAGCTTTTGTGTGGTAATCAGGCTCCTGGTTTCATCATCGACATCCACACTGGAAAACCCATCGACATCGACGAGTGTCGCGAGATCCCAGGCATCTGCGCTAACGGCGTCTGCATCAACCAGATCGGCAGTTTCCGCTGCGAGTGTCCCATGGGCTTCAGCTACAACAACATCCTGCTCATCTGCGAAGATATTGACGAGTGTAATAGCGGAGACAACCTGTGCCAGCGCAACGCTAACTGCATCAACATCCCCGGAAGCTACCGATGCGAGTGTTCAGCCGGGTTCAAGCTATCGCCAAGCGGAGCCTGCATAGATCGTAACGAGTGTCAGGAGATCCCGAACGTCTGCAGTCACGGCGAGTGCATCGACACACAGGGCAGTTTCCGATGTCTGTGCCACAACGGCTTCAAAACTACGCCGGACCAGACCATGTGTATGGATATCGATGAATGTGACAGACAGCCGTGTGGAAACGGGACGTGTAAGAACACAGTGGGCTCCTACAACTGTCTGTGCTTCCCCGGGTTCGAGCTCACACATAATAATGACTGCATGGATATTGACGAGTGCAGCGTTCATGCTAGTCAGGTGTGCAGGAACGGTCAGTGCATCAACAACATGGGCTCCTTCAAGTGTTTGTGTCTGGACGGGTATAACCTGACGCCGGACGGCAAAAACTGCGTCGATATCAATGAGTGTGTAACGCTGCCGGGCGCCTGTCAGCCGGGAACCTGTCAGAATCTGGACGGCTCATTTCGCTGCATCTGTCCGCCTGGGTACGAAGTGCAGAACGACAAGTGTGTCGATATCAATGAATGCAACGTGGAGCCAAATATCTGTCAGTTCGGCACGTGCAAAAATACACCGGGAAGCTTCCAATGCATCTGTCAACCTGGATTCGTCCTATCAGACAATGGCCGACGCTGTTTTGACACACGTGAGAGCTTCTGTTTCACACGCTTTGAAGCGGGTAAATGTTCAGTGCCCAAACCACGCAACACAACTAAAGCAAAGTGCTGCTGCAGTCTGCTGCCAGGTGAGGGATGGGGCGACCCCTGCGAACTCTGCCCACGAGATACAGAAGAAGCTGCGTTTCACACGTTGTGTCCCTACGGTCATGAGGCCGTCCCTAAACCCGAAGGACGTGAGGACATGAACGAGTGTGTAGAAAACCCAGAAATCTGCGGGAACGGTCTGTGCATTAACACTGATGGTTCGTTCCGCTGCGAGTGTCCATTCGGATATAACCTCGACTACACAGGCGTCAACTGTGTGGACACTGACGAATGCTCCATTGGAAACCCTTGCGGAAATGGCACATGCTCAAACGTTCCTGGAGGTTTCGAGTGCTCCTGTCAGGAGGGATTTGAACCCGGACCCATGATGACCTGTGAAGACATCAACGAGTGTGCGGTGAATCCTCTTCTCTGCGCTTTCCGCTGCGTCAACACCTTCGGCTCATACGAGTGCATGTGTCCAACAGGATATGTGCTGCGTGACGACAACCGCATGTGCAGAGACCAGGACGAGTGCGCTGAAGGTCTGGATGATTGCGCGTCCAGAGGAATGGCCTGCAAAAACCAGATTGGCACCTTTATGTGCATCTGTCCACCCGGCATGACACGACGCCCTGATGGAGAGGGATGCATGGATCTGAACGAGTGCCGCAGTAAACCAGGAATCTGCAAGAATGGGCGCTGTGTGAATACGGTGGGCAGTTACCGCTGCGAGTGCAACGAGGGCTTCGAAGCCAGCGCAACAGGCACAGAGTGCATCGATAACCGTAAGGGCTTCTGCTTCACGGAGGTCCTGCAGACAATGTGCCAGCAGTCGTCCACCAACAGAAACACCGTCACCAAGTCTGAGTGCTGCTGTAACGGAGGCCGCGGCTGGGGCTCGCTCTGTGAACTCTGTCCTCTGCCTGGAACCATCCAGTACAAGAAGATGTGTCCGCTCGGCCCCGGATACACCACTGACGGCAGAGATATCAACGAGTGTGAGGTGATGCCCAACCTGTGTAAGAATGGCCAGTGCATCAACAGTGTGGGCTCTTTCCGCTGCCACTGCAATGTTGGGTACACCAATGACTTCACCGGCACCTCCTGCATTGATATGGACGAATGCTCTCAGTCGCCCAAACCGTGTAACTTCCTGTGCAAGAACACTGAAGGCAGCTACCTGTGCTCCTGTCCCAGAGGATACATCCTACAGCCGGATGGCAAGACCTGCAAAGatTTGGACGAGTGCTCAACCAAGCAGCACAACTGTCAGTTCCTGTGCGTCAACACGATCGGTGGTTTCACCTGTAAATGCCCCTCGGGCTTCACACAGCACCAGACGGCCTGCATAGACAACAACGAATGCAGCAATCAGCCGAACATATGCGGGTCCCGTGCCTCCTGCCTCAACAGTCCCGGCAGCTTCAACTGCGAGTGCCAGAAGGGCTTCTCTCTGGATGCCACGGGACTCAACTGTGATGACGTCGATGAATGCGGTGGAAACCACCGGTGCCAACATGGCTGCCAAAACATGATGGGAGGATATCGCTGCGGCTGCCCACAGGGTTACGTTCAACACTACCAATGGAACCAGTGTGTGGATGAGAACGAATGCACTGGAAACCAAGTCTGTGGGTCGGCGTCTTGCTATAACACTCTGGGCAGCTATAAATGCGTGTGCCCGTCAGGTTTCGACTTTGAGGCCACTGCTGGGGGCTGTCAGGACGTTAATGAATGCTCCATGGGTAATAACCCCTGCAGCTATGGATGCTCCAACACAGATGGCGGATACTTGTGTGGATGTCCAGGAGGCTTCTACCGAGCTGGACAAGGGCACTGCATCAATGGGGTGGGCTTCCAGGGTCAGTTTGGCTCGGAGGGAGGAGACGATGAAGAGTCGCTGTCACCTGAGGCCTGCTACGAGTGCAAGATCAACGGTGACCTGGGAAAGAAAGGCCGTCACAGGCGTAATGCTGATGATAATGAGCTCAAGGAGACGGTGAGCATGGCCAGCATGGACATCCAGACCTCCATCCCCATGAACTTGAGTCTGGCGAAGCTCCTAAACAAGGAACCACTTCTTGAGTTGCTTCCAGCCCTGGAGCCGCTCGAGCACCACGTGCGCTACGTCATAACGCACGGAAACCAGGGCGAACACTTCCGCATCCTGGAGCGCCGTGACGGGAAGAGTGTGCTGCGCCTGGGCCGGAGGCCACCAGCTCCAGGTTTGTACCGGCTGGAGATCGCCAGCCTGCGTCTGTTCGGTCCGCGCAAACTTCAGCAAATGGAGGACCAGCACGACAGCGACTACTTGCTAGGGGAAATCGGCGACGCACTGCGCATCAAGCTGCACATCCACCTGCACTGA

Function

GO:

id name namespace
GO:0003160 endocardium morphogenesis biological_process
GO:0060958 endocardial cell development biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0003250 regulation of cell proliferation involved in heart valve morphogenesis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090112-3 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including circulatory system development; notochord morphogenesis; and regulation of cell proliferation involved in heart valve morphogenesis. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including epidermis; hypoblast; hypochord; immature eye; and paraxial mesoderm. Human ortholog(s) of this gene implicated in congenital contractural arachnodactyly and scoliosis. Orthologous to several human genes including FBN3 (fibrillin 3).

Ensembl:

ensembl_id ENSDART00000167748

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042299 lncRNA downstream 637683 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042298 lncRNA downstream 783083 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042297 lncRNA downstream 1176483 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00040911 lncRNA downstream 1372221 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042296 lncRNA downstream 1631821 2889663 ~ 2892546 (-) True XLOC_020738
TCONS_00042300 lncRNA upstream 88523 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042301 lncRNA upstream 100623 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042302 lncRNA upstream 137823 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042303 lncRNA upstream 174928 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042304 lncRNA upstream 208578 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00040933 mRNA downstream 85056 4408643 ~ 4439311 (-) True XLOC_020754
TCONS_00040932 mRNA downstream 116496 4315256 ~ 4407871 (-) True XLOC_020753
TCONS_00040931 mRNA downstream 126298 4313605 ~ 4398069 (-) False XLOC_020753
TCONS_00040929 mRNA downstream 610145 3910731 ~ 3914222 (-) True XLOC_020751
TCONS_00040927 mRNA downstream 610205 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040936 mRNA upstream 90952 4735436 ~ 4742866 (-) True XLOC_020757
TCONS_00040937 mRNA upstream 100621 4745105 ~ 4760187 (-) False XLOC_020758
TCONS_00040938 mRNA upstream 117994 4762478 ~ 4769140 (-) True XLOC_020759
TCONS_00040939 mRNA upstream 128376 4772860 ~ 4778018 (-) False XLOC_020760
TCONS_00040940 mRNA upstream 131976 4776460 ~ 4780010 (-) False XLOC_020760
TCONS_00040930 other downstream 211249 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 843642 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3294345 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3364618 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 3706960 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040947 other upstream 174926 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 183472 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 254102 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 1065519 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 1100819 5745303 ~ 5748548 (-) False XLOC_020795

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_11464522_11490298.mRNA True 5465 mRNA 0.56 37 CI01000030 11464522 ~ 11490628 (+)
bowfin (Amia calva) AMCG00006062 True 8757 mRNA 0.60 65 CM030142.1 12785301 ~ 12839664 (+)