RNA id: TCONS_00040931


Basic Information

Item Value
RNA id TCONS_00040931
length 6806
RNA type mRNA
GC content 0.49
exon number 21
gene id XLOC_020753
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4313605 ~ 4407871 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTTCGCTGACCTGCAGTCATGGACCCATCTTTACCTCCAGACCCAAACCCAGCGGAGACGGAACCCTCTGCAGACGTGACTCCACCAGCAGACACTGATCAGGACTCTCCTATTAACCCTCTGGTGGATCCACAGCCATGCGACACCCCTATTTCAGATCTAGTCCACGAACCGGCGGCGCCCGCAGAACCGACCCCGGCTCAAGGACTGAAACCAGAACTGCCTGCACCAGAACTCACAACACAAAACCTGATCCCAGgaccggctccggctcctccacCCGGCGCCAACTTCAACAAGATCATGACCTTCAGGCCCACCATGGAGGAGTTCAAGGACTTCGGGAAGTACATCGCCTATATGGAGACGCAAGGAGCTCACGTTGCCGGACTGGCGAAGGTTATTCCGCCGAAGGAGTGGAAACCGCGCCGTTCCTACGAGACCATCGAGGATATGGTCATTCCTGCTCCCATCATGCAAGTGGTGACCGGCCAATCTGGGCTCTTCACACAGTACAACATCCAGAAGAAGTCCATGACCGTTGGAGAATATCGCAAACTGGCCAACAGTAAAAAGTACAACACTCCTCAACACAAGGACTTTGACGACCTGGAAAGGAAATACTGGAAAAACCTGACGTTTGTGTCGCCTATTTATGGCGCAGACATCAGTGGGTCACTCTACGACCCGGACATTTCGGAGTGGAACATCGGCCACCTGAACACTCTCCTGGACATGGTGGAGCAGGAGTGCGGGATCGTCATCGAAGGTGTGAACACACCGTACCTGTATTTCGGCATGTGGAAGACCACCTTCGCCTGGCACACAGAGGACATGGACCTCTACAGCATCAACTACCTGCATTTCGGAAAACCAAAGTCCTGGTATGCCATTCCTCCCGAGCACGGCAAGAGGCTGGAGAGGCTGGCGCAAGgaTTTTTCCCAGGAAGCTCCCAGGGCTGCGATGCCTTTCTCCGACACAAGATGACCCTCATTTCTCCCTCAATCCTCAAGAAGTACAGCATCCCGTTTGACAGGATCACGCAGGAGGAGGGTGAGTTCATGATCACCTTCCCGTATGGGTACCATGCCGGCTTCAACCATGGCTTCAACTGCGCAGAGTCCACCAACTTCGCCACGCTGCGCTGGATCGACTATGGCAAGATGGCGGCGCAGTGCACGTGCCGCAAGGACATGGTGAAGATCTCCATGGATGTGTTTGTGCGCCGCCTGCAGCCGGAGCGTTACACGCAGTGGAAACAAGGTAAAGACACAATGGTGCTGGACCACCTGAAGCCCACCAGCCTGAGCAGCCCCGAGCTGGAGCACTGGAGGAAGAACAGAGTCACCTTTAGGGAGAAGGTCCTGCGCAGAGCTCAGGCGAAGATGAAACAGTTTCGGCGTCTGAAGCCGGAGGACCTGAAGGTGCTGATGGAGGCGGGTGTGGAGCTGGACATGGAGGAGTACCAACGCAAGGTGGAGGAGCATGACGAGCAGCGGCGCCAGCAGAGGGACGAGCGCATGGCCAGAGAAGCCATGCTCACGCTGGAGGCGCTGGAGAGAGAAGAGCAGGAGCAGGCCGAGGCAGCGCTTCGAGGAGGAGGAGTTGAAGAAATAAAAGCCGATTTCCAGGATCCTCCAGTGGAGAACggagaaaagaagaagaaaaagaagaaaaagcttcAACTCACAGATGAAATGTCCTTCCAGGAAGTGTTTGAGCAGTTCACCACCGCCAGCGAAATGCAGAACCAGAGCAATGGAGCTGCCCCTCTGCAGacaaatCCGTTCACGAAGCTGAAGAAGAAGGTTGAGGTGAAGAAGAGCCGAAGGCATCCAATCAGCAAACCGCCGATGCGTTCGCCTCACTCCATCGTCAAACAGGAGGCCTCCAGCGATGAGGAGCTCTACTCAGGGCTGCCAGTAGGTGGCGGTGTCACTCACGAAAGCAAGAAGCCCGAAGACAGCGACCTGTGGCAGAACCGTTCGCCGAACTTCCTAGCCGAGAAACAGTTCAACGCGGCCATGTCCACCATTGAGCCGTACTGCGCCATCTGCACGCTCTTCTGCCCGTACACACAGTCTGTGAAGGACCCCTTCCACATCTCGGACATGTCTGGTCTGGTGTCGCGGGTCGGCTGCCGCACTCGTCCGCTGGTTCCCGAGATGTGCTTCAGCGCCGGAGCCGAAAACATGGAGCCGCTTTCCTCAAACTCCCACATTGCAGACGACGGCACCAGCGTACTGCTGTCCTGCTCCGGCTGCAACCTGCAGGTCCACGCCAGTTGTTACGGCGTCAACCCTCAGACAAAACAGGAGGGCTGGATGTGTTCTCGGTGTACTACGGTGGCTTGGACAGCCGCCTGCTGTTTGTGCAGTTTAAGAGGAGGAGCGTTAAAGAAAACCACAGATGAAAGATGGGTTCACGTGATCTGTGCCATCGCTGTAGCCGAGGTTCGTTTCGTTAATGCTATTGAGCGTGAGCCTGTGGATGTGACTGCGGTCCCTGAAACCAGGAAGAGTCTGAAATGCGTGTACTGCCACAAGACGACCAAGCAGATTTTCGGCGCATGTATCCAATGCTCACAGGACAACTGCTCCACGTCTTTCCACGTGACCTGCGCCCTCCTCGCCGGAGTCGTCATGAAGCCTGCTGATTGGCCGTATGTGGTGTCCGTCACCTGCCACAAACACAAACTGACTAATCAGAAGGCTAAAAGTGGCTCTCGCGACCTTTCTCTGGGTCAGGAGGTCATCGGCAGGAACAGCAATGGCTGGTTTTATCGCTGCGTCATCACCGGCACCGGCACACAAACTTACTACGAGGTCAACTTTGACGACGGATCCTACTGTGACAACATCTTCCCAGAGAACCTGCTGAGTCACGACTGCCTGCGGAACGGCCCGCCAGAACTGGGCGAACTCGTGGTGGTCAAAACTGTCGATGGACGGGTTCTCAACGCATCTTACATCAAGGAACACGTCCACCGATACTACCAGGTGGAGTTTCAGGACGAGACGCAGCTCTTACTGAAGCGCAGCGAGATTCACTCTCTGGACCAAGAGCTGCCCAAGAGGGTCATGTCTCGTCTGGCAACCGTGAACCAGCAGCAACCTCAGGCTCAACCATCAGACGAACCTCTGGCCGCAAAACGCCCTCGTCTGCCGACCCCGCCGCCCACGTTAGCCATCGAGCCCTCTGCGCTACCTCCTGAGCTAGTCTCCACTTTCCTGCCCCCTAGTATTACCGCGAACACCAGCACTGCCCCTTGCTTGCCACCAGCTGCACTACCCGTTTCAGCGCCCCCAGAACCCAGCGAGAGTTACACCCACAGCTCCAGCTACATCGCCTACATGGAGTCTCTCCTCAAGTCGGACTTTCCCGCGGAAGACGGCGAGCCCGGCCTCGAGCCTATGTATTGAAGCAGCTAACGCTTTCAGACTTTCAATTCATTCACTTGCATGTCTTTGTTTCATTTATTCGCTGTTGTGCTAATCGGAGTCCTCCCACCCATTGATGGTGCGCGTGGGACGCATGTGTGTCACTATAGACTGAAGCCGGAACGGACCCAGTACAGAGCCTTGGGGGGATGCCGTGCTCTTCCACGACCCCTCAATTCGCCTCTTTCAATAAACGAAAAGATCCCACCACCGGAACGATCACCTACTGTATGTGCTGTTTACTTTAACACGGACTTTTTCTTTTCTCTAATGAGTGCTAAATATTTTTCTAACGCGACTCAAAACACGCTACCCGGTCACAGATCAACAGCCAGTCTATATCTGTACAGTTTCCGATATTTCTCAAGTGTTCGGGGAGGGATGGGGGGGGACCACAGGAAGAGTTTTAGCGGGGATTTAACAAGTATTTAAACGTCTTTTGTCACATATAgatttaatatttgtataaaggAAATCACAACTATGGCAGCATCAGAAgctacagtttgtttgtttttttgggttAGCGTACGCATTACGATAGATCTCGCGCGTCTTCATGTATACTTCTATAATCGAcgataaaaatgtttttcagcGCCAGgtgaatgattttttttgtagCATACTTGGTAGACGTTGATATTGAAATACTATTCACCTCgtctgttttttattatatttactgttgttgttatgattattatttttattggtttataaTTTTCGGTGCAACGGAGTTTCGGGAGATTTAacggaaaaaaaaatgcaagtggAATTGATCGTTTTTATTGAGGAGTTCGGCATACATTTAAGCGTATAGTCATAGGTGAGGTTAAACATGCGCAATCCGCCTTCTCAAGGTGCTATAGAGGTCAGAGACTACTGAGGGGCGTTGGGATGAGGTGTACATACTAGACGTCCTGAACATCGACATTCTTCTTCAGTGTAACTTCTAGTCTTATCGAATGCCATGTCACGTTCTAATAAAGGGTCTGGGTGTCGCTTTGAATTGGTTTTCTCCTTTTTTGTTGGTTCTCCATCTTGTTTGATCTCATGACGTATCACTGGTTTTCTCGTCCAATTAGCATCGAGAATTCACTTCAAGGCCATCTTGGTTCATTCAGAAACAAAGGCTCGGATCAGATCTTTTTAGAAACGATTGCTTTAGCATGCCAAAGAGTTCAAAGAAGCGTCCAAGacgcagaataaataaataaatgcatgaaaagTCAAGACGTGTGACAGAAAAGGCGTGATGAATTGCATTGATTCCCTTTGCATTACTTGTGAACACTTGCATTAATTTGACAGcgcttctgtttatttttattcttcttattattattagaatgatTTATAATCCAAGTTACACCTTTAATCTTTTGGGATGAAGTGCGTACTGAGGTTATATCTGCTACACCGTCTCGAGCGCATCCTTTTTGATGTGACGACTGTCGTTTTCGTCTCAACGCTTCCGTTTGTTGTTTTCCACCTGTCAGCGACGCCTACGGCCGCTCCAAGACTAGACTCAGTGTGTCAATGGCATTTGTACTCCTCTGTTCTTGAAGTTTCTGCCTTGCATTAACAGAAACGTCACGAGAGGCAGGTTTAATGAAATAACCCAACACGGCTTGCATACTGATGGTGGCAAATGTTTATCTGTGCAGAAGTAATAGGAAAGATTCTAATAAAATGTGAAGTGAAACTGTTCTTTACGTTTGTTTGTTTCCTTGGAATGAAGAAAAACTGAAGTTAATTTCTGGGAAAGTGGTAAATATTAAAGGttattttataattgtgtttaaaataaaggtACATTTTGAATAATTTCATACGCAGGCAACAAATAAGCcacaaaaatacttaaaatgcTATATTATGCATTCATGGCTAGTATAGCTGGAAAGATCACTTAGtagaaagcaaaaaacaaacaaaaacaaagacagaggctgcgtccgaaaccgcctactactcaataggtacggcatttaaatttaaacgtactactcggcgtTAGAAAattgcgttctatacagtatgaatgtgaacagtatgaatggaattcagatgtactacatctgccattttgtcatgatcacgtgacctacctgcgtcagttgcgtcactttactcccattcataaattcgctcgcggggcatcatgggacgGCGCAGCATGTATGGGatgcgcactttagaatctcgccggaagtagtaggtcatcctggtacttctcgcatactaatattcaaattctatgaattcggtcATACTACTCGgctgcatactgattttagcgtactgtatagtatggaagtatgcagtttctgATGCAGCCCGAATACAGAGCATTGAGACACACCACACTGTTCAGTCACTTTGCTAATGAATGCACACTTACTACCCACTTTATATGgttcacctgtccaactgctcgttaacgcacatttctaatcagccaatcacatggcaccaactcaatgcatttaggcatgtcgaCATAGTCAAGACGACCTACTGGTAtgcaaaccgagcatcagaatggggaagaaagaggatttgagtgactttgaagGTGCCATGTTTGGTTGTGCAAAAcatgctggtctgagtatttcagaaactgatggtctactgggattttaacacacaaccatctctaggctttacagagaatagtcagaaaaagagaaaatatccagtgatcgGCAGTTCTGTTGGCgtaaatggccagactggtttcagctgatagaaaggcaacagtaactcaaataagcactcgttacaaccgaggtctgcagacgagcatctctgaaaacacaacacgtccaaccttgaggcggatgggctacagcagcagaagaccacaccgggtgccgctcctgtcagctaagatcaggaaactgaggctacaattcacacagactcaccaaaactggacaatagaagattggagaaacgttgcctgctctgatgagtctccatttctgctgccacattcagattgTCGGGTCAGAATtcagcatcaacaacatgaaagcatggatccatcctgccttgtattaatggttcaggctggtgtaatggtgtgggggatgttttcttggcacactttgggctcattattactaattgagcatcgtgttaacaacacagcctacctgagtattgttgctgaccatgtccacccttatatgaccacagtgtaaccatcttctgatggctacttccaggaggataacaaaggattaaggcagttctgaaggcaaagataagatgtacctaataaaatggccagtgagtgttttGACTATTTCTGTGAAATTAATGAGTTCAAAAAATTAGTCCATTTCCCCAC

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0035097 histone methyltransferase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0032452 histone demethylase activity molecular_function
GO:0032454 histone demethylase activity (H3-K9 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-664 Predicted to enable histone demethylase activity (H3-K9 specific). Predicted to be involved in chromatin remodeling. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Is expressed in caudal hematopoietic tissue. Human ortholog(s) of this gene implicated in several diseases, including autistic disorder; gastrointestinal system cancer (multiple); head and neck cancer; malignant peripheral nerve sheath tumor; and withdrawal disorder. Orthologous to several human genes including KDM4B (lysine demethylase 4B).

Ensembl:

ensembl_id ENSDART00000181893

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042299 lncRNA downstream 426921 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042298 lncRNA downstream 572321 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042297 lncRNA downstream 965721 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00040911 lncRNA downstream 1161459 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042296 lncRNA downstream 1421059 2889663 ~ 2892546 (-) True XLOC_020738
TCONS_00042300 lncRNA upstream 334938 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042301 lncRNA upstream 347038 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042302 lncRNA upstream 384238 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042303 lncRNA upstream 421343 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042304 lncRNA upstream 454993 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00040925 mRNA downstream 399383 3910610 ~ 3914222 (-) False XLOC_020751
TCONS_00040929 mRNA downstream 399383 3910731 ~ 3914222 (-) True XLOC_020751
TCONS_00040928 mRNA downstream 399443 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040927 mRNA downstream 399443 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040926 mRNA downstream 399443 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040933 mRNA upstream 10574 4408643 ~ 4439311 (-) True XLOC_020754
TCONS_00040934 mRNA upstream 126298 4524367 ~ 4644484 (-) False XLOC_020755
TCONS_00040935 mRNA upstream 196396 4594465 ~ 4649238 (-) True XLOC_020755
TCONS_00040936 mRNA upstream 337367 4735436 ~ 4742866 (-) True XLOC_020757
TCONS_00040937 mRNA upstream 347036 4745105 ~ 4760187 (-) False XLOC_020758
TCONS_00040930 other downstream 487 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 632880 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040899 other downstream 3083583 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 3153856 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 3496198 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040947 other upstream 421341 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 429887 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 500517 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 1311934 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 1347234 5745303 ~ 5748548 (-) False XLOC_020795

Expression Profile

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