RNA id: TCONS_00040958


Basic Information

Item Value
RNA id TCONS_00040958
length 1038
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_020771
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 4939559 ~ 4944795 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcaggtgtgtttggtgatGAAGATGTGAAACCGGTGTTTGTCCGGGAGACCAATTATATCACTCTGTGCTCTGGTCTCACTGAAATGATGGATGATGATCAGATTCAGTGGAGATTTGAGAGGGAAAATGCTTTAATAGCAGAAATCAACGACACGGCTGGCAGATTCTCTGTATTTGATTATGTTCTTGAtgggagattcagagacagactgaaactggacaataaaactggatctctgaccatcacagaCACCAGAATGAATCATAATGGACTTTATCAACTACACATTAACAATGCGAGCAAGGCTTTCAGTCTCACTGTGCGAGgTACCAATCGCTTTAGACATACAGTGACAGTGATGGCACAGAAAGGGAAATCTGTCACTCTGAACACTTCTTTTGTCGAAATTCTGGATAATGATTTGATTCACTGGAAGTTTGATAGTAAACAGATCAATTTAATAGCTGAAATCAATAAACGAAACAACAGCATCACTGTATTCGAAGATGTTTTTGAtgggagattcagagacagactgaaactggacgataaaactggatctctgaccatcacagaCACCAGAACTGAACATGCTGTCCCTTCTGTGACAGAGGGGGATTCAGTCACTTTAAACTCTGGTTTTACTGAACTGAAGAATGATTGGATTCAGTGGAAGTTTGGAAATGAAGACACATTAATTGCTGAAATCCTTAAATACAGATTCTCTGTATTTGATGATGTCCTTGAtgggagattcagagacagactgaaactggacaataaaactggatctctgaccatcacagaCATCAGAACTGAACATGCTGGAGATTATAAACTTTGGTTCAACTATGAGAGAAAAATGACTTTCATTCTCACTCTCGGCTCTGTTCACTGCTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGTTCTGGTGGGCGTGGCTACTGTCAttattgtgctttatgacatcagATCCAGAAGAGCTGAACAAGATCAAGCACATATTCACGCATCACAAACCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000147116

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042305 lncRNA downstream 61813 4877104 ~ 4877746 (-) False XLOC_020764
TCONS_00042304 lncRNA downstream 85744 4853062 ~ 4853815 (-) True XLOC_020765
TCONS_00042303 lncRNA downstream 119413 4819412 ~ 4820146 (-) False XLOC_020764
TCONS_00042302 lncRNA downstream 156535 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00042301 lncRNA downstream 193117 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00040965 lncRNA upstream 60541 5005336 ~ 5006730 (-) True XLOC_020773
TCONS_00040970 lncRNA upstream 115090 5059885 ~ 5062921 (-) True XLOC_020775
TCONS_00040972 lncRNA upstream 195735 5140530 ~ 5145022 (-) True XLOC_020777
TCONS_00042306 lncRNA upstream 322728 5267523 ~ 5274962 (-) True XLOC_020780
TCONS_00042307 lncRNA upstream 368176 5312971 ~ 5315485 (-) False XLOC_020781
TCONS_00040957 mRNA downstream 8496 4926777 ~ 4931063 (-) True XLOC_020770
TCONS_00040956 mRNA downstream 26528 4908913 ~ 4913031 (-) True XLOC_020769
TCONS_00040954 mRNA downstream 46622 4885017 ~ 4892937 (-) True XLOC_020768
TCONS_00040953 mRNA downstream 52158 4884980 ~ 4887401 (-) False XLOC_020768
TCONS_00040952 mRNA downstream 58956 4876634 ~ 4880603 (-) False XLOC_020764
TCONS_00040959 mRNA upstream 17575 4962370 ~ 4989917 (-) False XLOC_020772
TCONS_00040960 mRNA upstream 17704 4962499 ~ 4989803 (-) False XLOC_020772
TCONS_00040961 mRNA upstream 17865 4962660 ~ 4990045 (-) False XLOC_020772
TCONS_00040962 mRNA upstream 38748 4983543 ~ 4989914 (-) True XLOC_020772
TCONS_00040963 mRNA upstream 52989 4997784 ~ 5006119 (-) False XLOC_020773
TCONS_00040947 other downstream 40265 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other downstream 40265 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other downstream 40443 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040930 other downstream 626441 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040924 other downstream 1258834 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040987 other upstream 765208 5710003 ~ 5713793 (-) False XLOC_020792
TCONS_00040991 other upstream 800508 5745303 ~ 5748548 (-) False XLOC_020795
TCONS_00040992 other upstream 801410 5746205 ~ 5749448 (-) False XLOC_020795
TCONS_00040993 other upstream 802806 5747601 ~ 5749450 (-) True XLOC_020795
TCONS_00040996 other upstream 926240 5871035 ~ 5894497 (-) False XLOC_020799

Expression Profile

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