G108874 (LOC106573552)


Basic Information

Item Value
gene id G108874
gene name LOC106573552
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6282071 ~ 6285940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123869
tgaagacatcacaactatgaaaaaacacatatggaatcatgtagtaaccaaaaaactgataaacaaatctaaatatattttataattgagattcttcaaatagcctccctttgctttgatgacagttttgcacagtcttggcattccctcaaccagcttcacctggaatgcttttccaacagtcttgaaggagttcccacataagctgagcacttgttggctcctTTTCTTTTACtcagcggtccaactcatcccaaaccatctcaatttagtTGCGGTcgggtcaggtcatctgatgcagcactccatcactctccttcttggtcaaatagcccttacacagcctggaggtgtgttgggtcattgtcctgtcgaaaaacaaatgatagtgggactaagcgcaaacccGATGGGAtcgcgtatcactgcagaatgctgtggtagccacgctggttaaatgtgccttgaattctaaatcacagacagtatcaccagcaaagcacaaccacacctcctcctccatgcttcacggtgggaaccacacatgcggatatcattcgttcacctactctgcgtctcacaaagacacagcggttggaaccaaaaatgtcaaatttggactcatcagaccaaaggacagatttccaccggtctaatgtccattgctcgtgtttcttggcccaagcaggtcTCTTTTTCTTActggtgtccattagtagtggtttctttgcagcaattcaaccatgaaggcctgatacccacagtctcctctgaacagttgatgttgagatgtgtctattactttgtaaaacatttatttgggatgcaatttctgaggctggtaactctaataaacttatcctctgcagcagaggtaactgggtcttcctttcctgtggtggtcctcatgagagacagtttcatcacagtgatttatggtttttgcgactgcacttgaagaaactttcaaagttcttgaaatcatcctgattgactgaccttcatgtcttaaagttaataatggactgtcatttatctttgcttatttgagggttcttgccataatatgggcacacctgttcattgaaatgcattccaggtgactacctcatgaagctgtttcagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggccacttcacctcatttgcacagactgtatatagacttttctactgtattattggctgaatgttttgtttattccatgtgtaactctgtgtcgttgtatctgtcgaactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaacttgcctacctggttaaataaaggtgaaattaaaattaATGTTAaaaactttgaagaatctaaaatctaaaatatattttgatttgtttaacaattttatttggttactatatgattccatgtgttatttcagagttttgatgtcatcgctattattctacaatgtataaaatagtacaaataaagaagaacccttcttgtatagacattatggacagtatgtggatataatatgtagtatatctgaaaaATCAATGAATATAGATCCATAGTGTTAGTGGTGTGAACACTGCAGATGCACTGTACACAGTAGCTATCTGCTGAGGCTTCAGAATGAACAGGATCCTGAATATGAGGGGACTTAGGgtcgcgtcccaaatggcaccctattccctttatagtgcactacttttgaccagggcccatatagagctctggtcaaaagaaatgTGGCTATATCGgggatagggtgccgtttgggacgcggCCCGACTGTTTTGGTACCCCGGCCATGTACCCTGGCCAACTAAAGCTATCGGCTCTCAGACGTGTCCTTCCTGTCAATGACATTGTCTTCACAGTGAGCATAGTCTAGTACAAGCTGTTTGGTGCTCATCGTAGGACAAGACACTGAAGTCAAGCCAGCCCAGGTTCAACCAGAGTGTGCCccaaaatgccaccctattcccaaaATGGGCtctgattaaaagtagtgcactacatagggagtagggtgataTTTGGGAGGCACGCTCATAGACATAGACAGTAGTAAATATCTGGAATGCACTTCCATCCTCCTCATAGAGCCACCGTTGGGAGGATATTTTCACAGGGTAAGCAGATAGAATCTTTTATAGCCAATTGGTAATGACACTGTCCTGTAAATCAACATCCAGAGATGAATTAGACTTTCTAACATGCGGAGTGGAAGAGGTTGGGAGTATTAGTGACCCATGACAATCAGTACATACAAGCGTTAGATCCAAGCACTGCTCCTTTTGATGATACAAATCAATATTTTAGCACATAAAATATTATTAACCGCTGTTACTAAAATCATCAATAATGTTTACAGTTTTAGAATTAGACACCAGTGCTTCTTCGACTTGCATAGACGAAAGTACTAGGATAACAGAGCAGAGCTCCCTGGCCATGACAATAAGCTGAACAAGTAGAACAACGCCCTTGACAGTGCACACACACTGGCAACAGTCACCTGTCCCAATGGTGGATCATGTCACCTCCAAATTGGCAGAATGGCATCATTATATGGATCATCTCTTGGAAAGGTCATTGGCCAGTAGGAATTGGAAAGGTCATTGGCCAGTAGGAATTGGAAAGGTCATTGGCCAGTAGGAATTGGAAAGGTTATTGGCCAGTAGGAATTGGAAAGGTCATTGGCCAGTAGGAATTGGAAAGGTCATTGGCCAGTAGGAATTGGAAAGGTTATTGGCTACAGATCAAAGGCAAGCCACAGTGCTAGAATAAGTAGAACAAGCTTGCTCATTTTGATTGCACCCATGACTTTACCAGTCAAATCACCATGGTCAGAGGTTCCAGACCGTTCTATTCGTTCTACTTCTATGAGGCAAGGCACTGCAGGACAAAATAAATAGACCCTCCATCTGGTTCTCTTCTGTCAGCAGCTCTATGTGCACATCATGAGACCACATCAACTTAACAATCAGTCATTATCATGTGTGAGGGACTACTGAACTGTTCAGACAGTCAGTAACTGTTACAGTGATGTTACAGTTTCCCAAACTCCATGCTCGGGactccaaggggtgcacgttttgggttTTTCGCCCAAACACtacaaagcttgatgattagttgattatttcaATCAGCGGTGTAGTGCTTAGGAAAGAAAGGAAACCCCGGGTCCTGAGGACTGAGTTTGGGGAAACCCTGACTTACAGTGGTAACAAGTTAAAATGGGGAGTCCAGGTCCTTCAGTTCCAACAGGTACTTGCTAAGTGCCTTCTCAGAGGCCCAGCACCCTACAGCCATGGAGCCCTTCAGGAGCCACTTAAGCAGTCCCACAGTGGCCCCTGGAGAGACAAGGGGAGCCAGAGTCTTGACCCCCACCATGGGGGCCACCATTTGGGGCAGGCTGAGGGCCACACTGCCCAGGGCCCCGACAGCGTTTCCCgcaaacagacacacagtgaGCGAGCAGGAGACGGCAGACAGCGCCAGACAGCGTGACATCAGCATCAACTCGTCCGCTGACAGCCAATCGCAGAGCACCGGGAGGAGAGCTGAGCCAATAAGGAGGATGTTGGCTGTGGTGCGGTCTTCGCTGAGCCACAGGAAGCCGAAGGAGAGCAGCGGTGGAGCCAGGACCTCGCCGGCCCACTCCAGGTCCCCCTGTACAGAGGTCAGGTatgggctgaaggagagaggcagggtgcaGAGGCCTGAGGAGAGACCGAGCAGAAAGAAACCCACTGC
>TU123867
ACACAGTAGCTATCTGCTGAGGCTTCAGAATGAACAGGATCCTGAATATGAGGGGACTTAGGgtcgcgtcccaaatggcaccctattccctttatagtgcactacttttgaccagggcccatatagagctctggtcaaaagaaatgTGGCTATATCGgggatagggtgccgtttgggacgcggCCCGACTGTTTTGGTACCCCGGCCATGTACCCTGGCCAACTAAAGCTATCGGCTCTCAGACGTGTCCTTCCTGTCAATGACATTGTCTTCACAGTGAGCATAGTCTAGTACAAGCTGTTTGGTGCTCATCGTAGGACAAGACACTGAAGTCAAGCCAGCCCAGGTTCAACCAGAGTGTGCCccaaaatgccaccctattcccaaaATGGGCtctgattaaaagtagtgcactacatagggagtagggtgataTTTGGGAGGCACGCTCATAGACATAGACAGTAGTAAATATCTGGAATGCACTTCCATCCTCCTCATAGAGCCACCGTTGGGAGGATATTTTCACAGGGTAAGCAGATAGAATCTTTTATAGCCAATTGGTAATGACACTGTCCTGTAAATCAACATCCAGAGATGAATTAGACTTTCTAACATGCGGAGTGGAAGAGGTTGGGAGTATTAGTGACCCATGACAATCAGTACATACAAGCGTTAGATCCAAGCACTGCTCCTTTTGATGATACAAATCAATATTTTAGCACATAAAATATTATTAACCGCTGTTACTAAAATCATCAATAATGTTTACAGTTTTAGAATTAGACACCAGTGCTTCTTCGACTTGCATAGACGAAAGTACTAGGATAACAGAGCAGAGCTCCCTGGCCATGACAATAAGCTGAACAAGTAGAACAACGCCCTTGACAGTGCACACACACTGGCAACAGTCACCTGTCCCAATGGTGGATCATGTCACCTCCAAATTGGCAGAATGGCATCATTATATGGATCATCTCTTGGAAAGGTCATTGGCCAGTAGGAATTGGAAAGGTCATTGGCCAGTAGGAATTGGAAAGGTCATTGGCCAGTAGGAATTGGAAAGGTTATTGGCCAGTAGGAATTGGAAAGGTCATTGGCCAGTAGGAATTGGAAAGGTCATTGGCCAGTAGGAATTGGAAAGGTTATTGGCTACAGATCAAAGGCAAGCCACAGTGCTAGAATAAGTAGAACAAGCTTGCTCATTTTGATTGCACCCATGACTTTACCAGTCAAATCACCATGGTCAGAGGTTCCAGACCGTTCTATTCGTTCTACTTCTATGAGGCAAGGCACTGCAGGACAAAATAAATAGACCCTCCATCTGGTTCTCTTCTGTCAGCAGCTCTATGTGCACATCATGAGACCACATCAACTTAACAATCAGTCATTATCATGTGTGAGGGACTACTGAACTGTTCAGACAGTCAGTAACTGTTACAGTGATGTTACAGTTTCCCAAACTCCATGCTCGGGactccaaggggtgcacgttttgggttTTTCGCCCAAACACtacaaagcttgatgattagttgattatttcaATCAGCGGTGTAGTGCTTAGGAAAGAAAGGAAACCCCGGGTCCTGAGGACTGAGTTTGGGGAAACCCTGACTTACAGTGGTAACAAGTTAAAATGGGGAGTCCAGGTCCTTCAGTTCCAACAGGTACTTGCTAAGTGCCTTCTCAGAGGCCCAGCACCCTACAGCCATGGAGCCCTTCAGGAGCCACTTAAGCAGTCCCACAGTGGCCCCTGGAGAGACAAGGGGAGCCAGAGTCTTGACCCCCACCATGGGGGCCACCATTTGGGGCAGGCTGAGGGCCACACTGCCCAGGGCCCCGACAGCGTTTCCCgcaaacagacacacagtgaGCGAGCAGGAGACGGCAGACAGCGCCAGACAGCGTGACATCAGCATCAACTCGTCCGCTGACAGCCAATCGCAGAGCACCGGGAGGAGAGCTGAGCCAATAAGGAGGATGTTGGCTGTGGTGCGGTCTTCGCTGAGCCACAGGAAGCCGAAGGAGAGCAGCGGTGGAGCCAGGACCTCGCCGGCCCACTCCAGGTCCCCCTGTACAGAGGTCAGGTatgggctgaaggagagaggcagggtgcaGAGGCCTGAGGAGAGACCGAGCAGAAAGAAACCCACTGC

Function

NR:

description
uncharacterized protein LOC109879833

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123869 False 3792 TUCP 0.45 3 6282071 6285940
TU123867 True 2159 TUCP 0.49 3 6283704 6285940

Neighbor

gene id symbol gene type direction distance location
ccdc12 ccd12 coding upstream 32029 6231369 ~ 6250042 (+)
LOC118937376 NA coding upstream 188131 6092079 ~ 6093940 (+)
setd2 LOC106593284 coding upstream 232570 6002992 ~ 6049501 (+)
LOC110505679 LOC106579367 coding upstream 279806 5976200 ~ 6002265 (+)
LOC118937375 NA coding upstream 302181 5978266 ~ 5979890 (+)
cep72 LOC106573558 coding downstream 618 6286558 ~ 6312599 (+)
trip13 LOC106590995 coding downstream 92433 6378373 ~ 6389788 (+)
nkd2b LOC106574162 coding downstream 116736 6402676 ~ 6499698 (+)
zgc:158766 LOC106590969 coding downstream 259428 6545368 ~ 6629469 (+)
LOC118937387 NA coding downstream 333170 6619110 ~ 6621596 (+)
G108876 NA non-coding upstream 173 6281550 ~ 6281898 (+)
G108872 NA non-coding upstream 2032 6279261 ~ 6280039 (+)
G108861 NA non-coding upstream 15589 6265941 ~ 6266482 (+)
G108845 NA non-coding upstream 52718 6229118 ~ 6229353 (+)
G108844 NA non-coding upstream 53324 6228409 ~ 6228747 (+)
G108873 NA non-coding downstream 28659 6314599 ~ 6318260 (+)
G108887 NA non-coding downstream 46089 6332029 ~ 6333259 (+)
G108888 NA non-coding downstream 48157 6334097 ~ 6344523 (+)
G108897 NA non-coding downstream 76964 6362904 ~ 6364789 (+)
G108911 NA non-coding downstream 100390 6386330 ~ 6386720 (+)
G108805 LOC106594197 other upstream 82730 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 223736 6056996 ~ 6058335 (+)
LOC110505637 LOC106573538 other upstream 323258 5953886 ~ 5958813 (+)
G108733 NA other upstream 381121 5900511 ~ 5900950 (+)
G109020 NA other downstream 347138 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 570146 6855864 ~ 6868976 (+)
malsu1 malsu1 other downstream 622607 6908511 ~ 6911256 (+)
LOC110535156 LOC106606167 other downstream 655576 6941465 ~ 6944043 (+)
G109821 NA other downstream 849307 7135247 ~ 7140979 (+)

Expression


Co-expression Network