G123304


Basic Information

Item Value
gene id G123304
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23010636 ~ 23040313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU142438
AAGAAATAAGAGAAAGGTGTCTGTGTGAAGGGGAAATGAGGAggcagaaaaggagagagagaggggagaggactaGAGAAGACTGGAGTTAGGCTGCAACACGAGAGGCAAAGCAacgaggagagggagaaagaagagagcaACAGGGATCGAGGGATGATCGAGGTGGAATCGGGCCGAAAACGCAGGAAAAGGAGGGAAAAATTGCCAGACTCATCCGACCTCTGCTGTGTGGGGACCGGACCCATCACCTGACTGCCCTCTCCTGTCTTCCTGGTCCTCAGCAGAACAGCCATGAGGTAGAGTCGGACATTTTGGAAAATTGTATCCAGCGACATCTTGCTAAGATGGATCCGAAGGCTTCTCTCTTCACCCTTCCACATCCTCCTCAACCCTACACGACCATCATGTCCTGTGTCCCCATCTCACCCAGTGCACAccaatttacaaacgaagcatttgcgTTTGATTCCGACAGAtcggaggcagtagggatgaccagCTTCCGGATGTTTCCCTCCATGTGGTTTTCTGGCTTCTGGTTATGTCTACAACTGTATCGCCTGTCAGTATGACTCCTGTGTGTTCCCACTTGACTGTCCAAtttgtgtatttgcatgtgtttatttcaggaaatggcttcctgaaatccctcaagcagctgattggtcgactccagggctaattggagagcttaCCCCGCCCCCTCGTAAAgacgcagctgtctccaattacctgttccttctgaagctatataaaagccagtgttctgttcaggagagaaagatttgctgggaggtcattgcatagggattttgctagagagatttgcgagagatttgctgggaggtcattgcagagagattgaatgtgagagagattttgctgggaggtcattgcatagggattttgctagagagatttgcgagagatttgctgggaggtcattgcatagggattttgctagagagatttgctagagatttgctgggaggtcattgcagagagattgaatgtgagagagatttgctgggaggttATTGCAGAGATTTTGCTAGATAATTTtgatgggagttcattgctgggaagttggtatgttctgtgagtttgttgctcaggtagagcttatttgatgtccttt
>TU142439
AAGAAATAAGAGAAAGGTGTCTGTGTGAAGGGGAAATGAGGAggcagaaaaggagagagagaggggagaggactaGAGAAGACTGGAGTTAGGCTGCAACACGAGAGGCAAAGCAacgaggagagggagaaagaagagagcaACAGGGATCGAGGGATGATCGAGGTGGAATCGGGCCGAAAACGCAGGAAAAGGAGGGAAAAATTGCCAGACTCATCCGACCTCTGCTGTGTGGGGACCGGACCCATCACCTGACTGCCCTCTCCTGTCTTCCTGGTCCTCAGCAGAACAGCCATGAGGTAGAGTCGGACATTTTGGAAAATTGTATCCAGCGACATCTTGCTAAGATGGATCCGAAGGCTTCTCTCTTCACCCTTCCACATCCTCCTCAACCCTACACGACCATCATGTCCTGTGTCCCCATCTCACCCAGTGCACAccaatttacaaacgaagcatttgcgTTTGATTCCGACAGAtcggaggcagtagggatgaccagCTTCCGGATGTTTCCCTCCATGTGGTGAGTGACTGTTTCCTCTGCCATTGTTCCTCCTGGCATGACCTTCCTGTTGAACCTCATGAACTCTTAGTAGCTCTGCTTAGCTATTGCCTCAACGTGTTAGATTGATTCATAGAATAGTTGGAATCGTTTTATGATAGCAAGCAAGTTGTGCACCTGCTGTCAATGTAATAGTTATGCTAAGACATGAACAAAGTATTAAATAGATTTAATTTCCAATGATATTTCCTTTATATTCTACATTGTTCTAGAAACGTATAGGCTGTGTTGCATTTCCTCCCATGGATTCCTCAGGTTTTCTGGCTTCTGGTTATGTCTACAACTGTATCGCCTGTCAGTATGACTCCTGTGTGTTCCCACTTGACTGTCCAAGTGAGTAACAAAACACCACTTCAAATCTATTGACCATTCACACAGATTTGTTTCATCACTCAAATACCCTCATCTCCCCAATGCCTGGTTAAGACTACATCCTAAACCCGCCTTAACACTGtctgtgtaggtctgtctgtgtaaTACTGCTTGTGTAGGCTGTTACAACTGTATTTTCTCCTTGTGAAAACATCCACTTGGTGCCtcatccttgaaatgttcttAGCAGTAAAGTCAGAGGATTTTTTTTGCACAGAAAGGCCCTAAGGTGCCCTTTAAGTTCTTGACTTCTTTGTGTAAGGTGACAGTCTCCTCCCACACACCATGGTATTCATATCCACCCAGTGCTGCACAATTACTGTTCAGCATATCACCCCCTTTCAGTGCACCCCCCTGGAGGCTGTATTTAAATATTATCATTAGGAGGGCTCAGACTGCCACTCTGCTGCCCCTTGAGAACAGCTTGACCACAAGGTTAGGGTGTTTCAGTGTGTGATAATGGCCTAGTATGTCCATCACTATACAGTACCCACTGCAATTCCTCACAATCTGGGCCCAAGTATGTATTCAGATGAGAATCTCTCCCAAAAGATGAGCTGAATTATTGAAGTCATGTTATGAAACCATCCCTTTTCCTGAAACTTCCATTTAGACATGATTCCTTTGTAGTGAGTGAAGATCAGAGGATTGTGCAGTCATGTTGTCCCCTGACTTGCAGATCGGGACCCAGCAGGTGGATCAGTTTGAGGAGGTGACCGTAGGGATAGACCGGCTCTACTCTATCCCCTCAGCTGGTCTGTGAAACCAGGGTACATACCAGTGTGAGATCTACTCTGACCAGTGTGAGATCTACTCTGACCAGCGCTCCTTAGTCAGACTACTACCACCTCATAGGtgataatagtgttgcagagagaagTTCATTCAAGTCCCATATTCCTTTATGTGTGTTGTATGGTGGGGACTCCCCATTCACCATCAATGTGTAGCATGGTGCccattttgtctctctctgtgttctgagtctctgacctctctccctcgatctctctcttttttggttccaggtagaatcctgaTGAGGACAGCTTGGCTGTTGaaacgttgttgctcctagagtgtgcggctctccttttctTGTCAATAACtattttggattccatgtagaaacctccggggaaagggttctacctggaaccagaacaGTTCTAACCAGGAAAAATATTTTTTCTAAAtaagcgtttcccaaactctggGTAcaattggtttttgctctaacactACACTGCTGACTCAAATGATCAAATaatgatgattagttgattatttgaatgagCTGTGTAATGCTAggacaaaaaccaaaacgtgcactccCAAAATGACCCTGTCCTATGGGTACAGCCGCAGAACCCTTTAATGTTCTAGGtagttacgttccccagtttatgagttgtagtttgtgtatttgcatgtgtttatttcaggaaatggcttcctgaaatccctcaagcagctgattggtcgactccagggctaattggagagcttaCCCCGCCCCCTCGTAAAgacgcagctgtctccaattacctgttccttctgaagctatataaaagccagtgttctgttcaggagagaaagatttgctgggaggtcattgcatagggattttgctagagagatttgcgagagatttgctgggaggtcattgcagagagattgaatgtgagagagattttgctgggaggtcattgcatagggattttgctagagagatttgcgagagatttgctgggaggtcattgcatagggattttgctagagagatttgcgagagatttgctgggaggtcattgcatagggattttgctagagagatttgctagagatttgctgggaggtcattgcagagagattgaatgtgagagagatttgctgggaggttATTGCAGAGATTTTGCTAGATAATTTtgatgggagttcattgctgggaagttggtatgttctgtgagtttgttgctcaggtagagcttatttgatgtccttt

Function

NR:

description
sperm acrosome membrane-associated protein 6

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU142438 False 1141 lncRNA 0.48 9 23010636 23040313
TU142439 True 2942 lncRNA 0.46 6 23010636 23040313

Neighbor

gene id symbol gene type direction distance location
LOC110538268 LOC106605601 coding downstream 39096 22968051 ~ 22971540 (-)
si:dkeyp-84f3.5 LOC106605600 coding downstream 45187 22953581 ~ 22965449 (-)
LOC110538037 LOC106605599 coding downstream 60866 22907086 ~ 22949770 (-)
im:7147486 LOC106605599 coding downstream 111116 22883978 ~ 22899520 (-)
LOC110538076 LOC106578103 coding downstream 127700 22864942 ~ 22882936 (-)
LOC110538089 LOC106605603 coding upstream 79069 23119382 ~ 23129010 (-)
LOC110538224 LOC106605608 coding upstream 136147 23176460 ~ 23200956 (-)
LOC110538290 LOC106605611 coding upstream 184176 23224489 ~ 23233768 (-)
LOC110538325 lin37 coding upstream 222150 23262463 ~ 23267059 (-)
hspb6 hspb6l coding upstream 235725 23276038 ~ 23278785 (-)
G123307 NA non-coding downstream 3829 23005839 ~ 23006807 (-)
G123306 LOC100194703 non-coding downstream 6724 23002206 ~ 23003912 (-)
G123348 has1 non-coding downstream 15411 22994979 ~ 22995225 (-)
G123346 NA non-coding downstream 17362 22993062 ~ 22993274 (-)
G123311 NA non-coding downstream 20008 22931756 ~ 22990628 (-)
G123363 NA non-coding upstream 10052 23050365 ~ 23050929 (-)
G123365 NA non-coding upstream 13129 23053442 ~ 23053662 (-)
G123367 NA non-coding upstream 14542 23054855 ~ 23055073 (-)
G123389 NA non-coding upstream 53500 23093813 ~ 23094363 (-)
G123399 NA non-coding upstream 73572 23113885 ~ 23114131 (-)
G123308 NA other downstream 4824 23004986 ~ 23005812 (-)
G122972 NA other downstream 632476 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 853102 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 982919 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 1154735 21851433 ~ 21856413 (-)
G123435 NA other upstream 145327 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 239866 23279116 ~ 23281851 (-)
G124840 NA other upstream 863526 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 1118854 24144519 ~ 24172836 (-)
G125003 NA other upstream 1228913 24269226 ~ 24270136 (-)

Expression


Co-expression Network