G138472 (LOC106605135)


Basic Information

Item Value
gene id G138472
gene name LOC106605135
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37274620 ~ 37278019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU159275
TGCACAATTTAATACTGCGATTACACAAAGATGTGAACAACGTCAGGGATGTTGTGGACTTGATGCGGATATGAATGCCTGAGGTAAACATACTGTTGTGTCTATTCCCTTTAAAACAGCACATGTACACAGCCTCTGATTTAAATGAATCCCAATTACATAACGGAATACTGGTTTAAACTGAACACATGTTGAGGTCAACACTTTCTGACGGCTTAAATCAGAGTGGTTAAGCACAACACACTATCTTAGTGCATTGGATTTTTGTTTAccacatacatttgtatatatttttttctcatctgGTGGTTTCACAATGGTTAGCAACAAAGGAAAACGGTTTGGTTTCTTAATGAAGACAAAATACCTTTTCTTGTGTATACGCTTTATGTAAGTAATAAAATATTACTATAACATAAATAGGAGAAATGTGACTTTGCAGCCTACATTTAGCAATCAACATACAACCAATGTAGTAAACAAAACATATTGAATTCCACTGCAACATAACCATTAACAGAGCCAAACAAAAAGCTCCAAACACATTTaggaaataaatatatatataaatggtcAGATTCATAAATGAAATCATATTAAAATATCTTCTTGGAATTAGTAAGTGTACAAAACTGCccgaaaaacaaaacaaacaaaaaaatatctcAGAACAAATACATGTTTACATATTCGACATATTTACACATTGGAAATAATCCTGGCAACATTTTATTTCAAATCTTTTTTTGAAGAAAGTTGTTTTTTCCCCGCTGTATCGAATAGCACTGTCTGCAGTACGCAATTGGGCTACTGTCCATCAGAATGTACCAGACCCTTGAGAAATGACACGCAACGCACGAGTAGGCTAATTAATCCGTTTTCCTTTCTTCTCCATATCAGAAAAATATCTAAAACCGGTCTCTTTATCACTTTTCAATAGAGAATTTTCAGAATTTCTCCGTATATAGTGGTTATAATACAATAATAGGAATGGTATAAATGAATGGGGCGTAGCATAAGCTACCTTTCAGATCAATATAGAAGGTACAGAATTCGAGTTCTACTTTTTATTGTGATATAAAGAATGAGAACAGCGTGACACTTCGACCTGGGGCACTGAAGTTACCTGAGAATATCACTTTCATTTCGTATTAGACCAATCTCTTTCCAAAGGTGGTTGGAATAGCTTGGCAGTTAGCAATGCAAGTTGCTGACGGCGCCCTGGAGTGATTTTAGGAACCTGTAAACATGAAAATAGTGAGTAAAGGCCTACCTCAAAACAAATTCTGAAAACAAAACTAATATGAAATTGCAATGATAATTTCAACGAAATAATAAGTGCTCCATACAAaaggaaaataataataaaaacaaatacacAAAAAACGACAAAACACGTGTTTCATAAAGTATTATTCCATATTGCCCTTTTTAGCGTCTGTTGCTATCTGCAAAGCATACATTTTTGAAGGCTGCCAGACGTGAGCTGTCCTGTTGCATTCGTCAATTTTGAAATGCATCTGACATTTAAGTGTGGGGATTTTTGTCATCAACGGGTGCCATAATTTCCATAATCTTTTCACAAACTCCTTTGGCCAGGTGACATTGTGTCAACAGTATGAGTAAGGGAGGCGTTTTTGATGAGTTACATTACACTAATACAATGAGAGAAACAATAAAACAGTATACAGAACAGAAGTGACACTGAAGTTCAAATCAAACATCACAATTAATATAACAAATATAAAGAATAGGCTAATAATTAGAAATAGTGGTTAATCGGTTTTAAGCCTGAAAGGCAAAatattaattgtgtgtgtgtgtctcctttgTTGATCATTTTCAGGCAACCACCTCGCACTGTGGTGAGCGCCATCAGTTCAAGACACCACTTGGAACATTTAATCGTTCCCGTTTGAACAGCCACGAAACATCGAATTTACTTCATCTCCTCCATAGAATTTTGGTAAATATAGATATTTGTCTCATTTAAAATGTGAACGAAATCATTTCAGTAATAGTGTATGTTTTtcttttcaaccattttccattcTACCTATTTGTTGTTGTAACACAAGTTCCGGGTACTGGGACAAAACTCATCTGTCTATCCAACTTTGCcatgtctctgttctttctcactCAGTAAAACAAAATGAAATACTGTAAACTCCATAGTCCTTTCCCTTTTTTTTATTGTTTCCCCCGAAATTGTAGGATTGTTCATGAAAACAGTCACTGCACAGGACTCTGTAATGTGTGGTGAAGAGGGGGGGTCTCCGCTTGAGAATATACGTCCTCCATATTCGGATGAGGGACCCCTATCGGCGTCATTCTTTTCTCTTTTTGTCTTCTGTTGCAAAACCAAACACGGACAACCTCTTTTTCCAATTGAAGAGAGCCGGCTAAACTGGTGATTTCATGGGCGGAGGGCTTGGGACATTTTAAGAAATGATTTTCCAGCGCCCCTTTCACCCCAACTTCAATCGAGGTCCTCTTCTTTCGTTTCCTGCCCTGCGCAGCAATCTTGTCCAAATTGGTGGGGCTGCCAGTGTTTGAGTCTGTCTCCTCCAGCCACTTGTTTAGCAGTGGCTTAAGTTTGCACATGTTCTTGAAGCTGAGCTGCAGTGCCTCGAACCTGCAGATAGTGGTCTGAGAAAAGACGTTTCCGTACAGGGTGCCCAAGGCCAAGCCCACGTCCGCCTGTGTAAAGCCCAGTTTGATCCTTCGCTGTTTGAACTGCTTGGCGAACTGCTCCAGGTCGTCGGAGCTGGGCGCATCCTCGTCTGAGTGGTCCTGGTGGTGGCTGAACGCCTGCTGGGGGGACTCCATCTGGTTGTCATGGCTACCTGTATCGTCGTGGAGCGGGTCCCGCATGCTGTGGTGCAGAGAGGCGGGCTGGGGACTTAGCATGGCGTTGAGGTTCGTGTATCCCGGCTGCGAGTAAACTAGCGACTGGTGCCCGTTGGAGGCAGGCGACAGCGGGGACAAGTGGTGCGCCGTTGTCGGCGCCCACGACCCATGGTGGCTACTCTGCGTCTGCTGGTGCACCAGGTGAGATCTATGGTGGAAGCCACTACTCAGGTCCTCTCGACTCGCCTGAACACTGGCTTTGTTGTGCTCCTGTTGCCCGATATGGGTACCGCTGGTCCAGTCGGTGTTGGAGGTGGGCAGCCACTGGTGGTGCGTCAGGCTCATCGGATGTCCCGTGTTGGTCGCCGCTAGCCCCTGCAAGTACTCGTGGTGCATCATTTTCTGCACCTCTCTGTAGGTCGTCCCCTGGTGCATCCTGTCCGAATCCGGATGCATGAGAGGGTTGGACGGTAAGGAGTTATTCCGCGGAATATACTGAGCTGTTGTAGCCATGGCTCCTACTTCGAAAACTGACGAGTACTTCGGA
>TU159276
TGCACAATTTAATACTGCGATTACACAAAGATGTGAACAACGTCAGGGATGTTGTGGACTTGATGCGGATATGAATGCCTGAGGTAAACATACTGTTGTGTCTATTCCCTTTAAAACAGCACATGTACACAGCCTCTGATTTAAATGAATCCCAATTACATAACGGAATACTGGTTTAAACTGAACACATGTTGAGGTCAACACTTTCTGACGGCTTAAATCAGAGTGGTTAAGCACAACACACTATCTTAGTGCATTGGATTTTTGTTTAccacatacatttgtatatatttttttctcatctgGTGGTTTCACAATGGTTAGCAACAAAGGAAAACGGTTTGGTTTCTTAATGAAGACAAAATACCTTTTCTTGTGTATACGCTTTATGTAAGTAATAAAATATTACTATAACATAAATAGGAGAAATGTGACTTTGCAGCCTACATTTAGCAATCAACATACAACCAATGTAGTAAACAAAACATATTGAATTCCACTGCAACATAACCATTAACAGAGCCAAACAAAAAGCTCCAAACACATTTaggaaataaatatatatataaatggtcAGATTCATAAATGAAATCATATTAAAATATCTTCTTGGAATTAGTAAGTGTACAAAACTGCccgaaaaacaaaacaaacaaaaaaatatctcAGAACAAATACATGTTTACATATTCGACATATTTACACATTGGAAATAATCCTGGCAACATTTTATTTCAAATCTTTTTTTGAAGAAAGTTGTTTTTTCCCCGCTGTATCGAATAGCACTGTCTGCAGTACGCAATTGGGCTACTGTCCATCAGAATGTACCAGACCCTTGAGAAATGACACGCAACGCACGAGTAGGCTAATTAATCCGTTTTCCTTTCTTCTCCATATCAGAAAAATATCTAAAACCGGTCTCTTTATCACTTTTCAATAGAGAATTTTCAGAATTTCTCCGTATATAGTGGTTATAATACAATAATAGGAATGGTATAAATGAATGGGGCGTAGCATAAGCTACCTTTCAGATCAATATAGAAGGTACAGAATTCGAGTTCTACTTTTTATTGTGATATAAAGAATGAGAACAGCGTGACACTTCGACCTGGGGCACTGAAGTTACCTGAGAATATCACTTTCATTTCGTATTAGACCAATCTCTTTCCAAAGGTGGTTGGAATAGCTTGGCAGTTAGCAATGCAAGTTGCTGACGGCGCCCTGGAGTGATTTTAGGAACCTGTAAACATGAAAATAGTGAGTAAAGGCCTACCTCAAAACAAATTCTGAAAACAAAACTAATATGAAATTGCAATGATAATTTCAACGAAATAATAAGTGCTCCATACAAaaggaaaataataataaaaacaaatacacAAAAAACGACAAAACACGTGTTTCATAAAGTATTATTCCATATTGCCCTTTTTAGCGTCTGTTGCTATCTGCAAAGCATACATTTTTGAAGGCTGCCAGACGTGAGCTGTCCTGTTGCATTCGTCAATTTTGAAATGCATCTGACATTTAAGTGTGGGGATTTTTGTCATCAACGGGTGCCATAATTTCCATAATCTTTTCACAAACTCCTTTGGCCAGGTGACATTGTGTCAACAGTATGAGTAAGGGAGGCGTTTTTGATGAGTTACATTACACTAATACAATGAGAGAAACAATAAAACAGTATACAGAACAGAAGTGACACTGAAGTTCAAATCAAACATCACAATTAATATAACAAATATAAAGAATAGGCTAATAATTAGAAATAGTGGTTAATCGGTTTTAAGCCTGAAAGGCAAAatattaattgtgtgtgtgtgtctcctttgTTGATCATTTTCAGGCAACCACCTCGCACTGTGGTGAGCGCCATCAGTTCAAGACACCACTTGGAACATTTAATCGTTCCCGTTTGAACAGCCACGAAACATCGAATTTACTTCATCTCCTCCATAGAATTTTGGTAAATATAGATATTTGTCTCATTTAAAATGTGAACGAAATCATTTCAGTAATAGTGTATGTTTTtcttttcaaccattttccattcTACCTATTTGTTGTTGTAACACAAGTTCCGGGTACTGGGACAAAACTCATCTGTCTATCCAACTTTGCcatgtctctgttctttctcactCAGTAAAACAAAATGAAATACTGTAAACTCCATAGTCCTTTCCCTTTTTTTTATTGTTTCCCCCGAAATTGTAGGATTGTTCATGAAAACAGTCACTGCACAGGACTCTGTAATGTGTGGTGAAGAGGGGGGGTCTCCGCTTGAGAATATACGTCCTCCATATTCGGATGAGGGACCCCTATCGGCGTCATTCTTTTCTCTTTTTGTCTTCTGTTGCAAAACCAAACACGGACAACCTCTTTTTCCAATTGAAGAGAGCCGGCTAAACTGGTGATTTCATGGGCGGAGGGCTTGGGACATTTTAAGAAATGATTTTCCAGCGCCCCTTTCACCCCAACTTCAATCGAGGTCCTCTTCTTTCGTTTCCTGCCCTGCGCAGCAATCTTGTCCAAATTGGTGGGGCTGCCAGTGTTTGAGTCTGTCTCCTCCAGCCACTTGTTTAGCAGTGGCTTAAGTTTGCACATGTTCTTGAAGCTGAGCTGCAGTGCCTCGAACCTGCAGATAGTGGTCTGAGAAAAGACGTTTCCGTACAGGGTGCCCAAGGCCAAGCCCACGTCCGCCTGTGTAAAGCCCAGTTTGATCCTTCGCTGTTTGAACTGCTTGGCGAACTGCTCCAGGTCGTCGGAGCTGGGCGCATCCTCGTCTGAGTGGTCCTGGTGGTGGCTGAACGCCTGCTGGGGGGACTCCATCTGGTTGTCATGGCTACCTGTATCGTCGTGGAGCGGGTCCCGCATGCTGTGGTGCAGAGAGGCGGGCTGGGGACTTAGCATGGCGTTGAGGTTCGTGTATCCCGGCTGCGAGTAAACTAGCGACTGGTGCCCGTTGGAGGCAGGCGACAGCGGGGACAAGTGGTGCGCCGTTGTCGGCGCCCACGACCCATGGTGGCTACTCTGCGTCTGCTGGTGCACCAGGTGAGATCTATGGTGGAAGCCACTACTCAGGTCCTCTCGACTCGCCTGAACACTGGCTTTGTTGTGCTCCTGTTGCCCGATATGGGTACCGCTGGTCCAGTCGGTGTTGGAGGTGGGCAGCCACTGGTGGTGCGTCAGGCTCATCGGATGTCCCGTGTTGGTCGCCGCTAGCCCCTGCAAGTACTCGTGGTGCATCATTTTCTGCACCTCTCTGTAGGTCGTCCCCTGGTGCATCCTGTCCGAATCCGGATGCATGAGAGGGTTGGACGGTAAGGAGTTATTCCGCGGAATATACTGAGCTGTTGTAGCCA

Function

NR:

description
PREDICTED: POU domain, class 3, transcription factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159275 False 3400 lncRNA 0.49 1 37274620 37278019
TU159276 True 3365 lncRNA 0.40 1 37274655 37278019

Neighbor

gene id symbol gene type direction distance location
LOC110533765 NA coding downstream 1645 37264176 ~ 37272975 (-)
LOC110488943 LOC106582967 coding downstream 348738 36922102 ~ 36925882 (-)
pnrc2 LOC106605140 coding downstream 425247 36844929 ~ 36849373 (-)
LOC118939565 NA coding downstream 733422 36487954 ~ 36541198 (-)
LOC110488840 LOC106605148 coding downstream 918830 36299063 ~ 36355790 (-)
LOC110488968 LOC106605134 coding upstream 54628 37332647 ~ 37337607 (-)
LOC110501508 LOC106605132 coding upstream 164340 37442359 ~ 37463839 (-)
LOC118939571 NA coding upstream 185966 37463985 ~ 37476762 (-)
LOC110489008 LOC106604987 coding upstream 499385 37777404 ~ 37782182 (-)
LOC118939581 LOC106604987 coding upstream 513220 37791239 ~ 37796388 (-)
G138433 LOC107717746 non-coding downstream 55957 37217954 ~ 37218663 (-)
G138349 NA non-coding downstream 110849 37163543 ~ 37163771 (-)
G138334 NA non-coding downstream 128449 37145920 ~ 37146171 (-)
G138274 NA non-coding downstream 182078 37092332 ~ 37092542 (-)
G138264 NA non-coding downstream 193708 37080655 ~ 37080912 (-)
G138484 NA non-coding upstream 8221 37286240 ~ 37286481 (-)
G138646 NA non-coding upstream 28548 37306567 ~ 37306788 (-)
G138651 NA non-coding upstream 37048 37315067 ~ 37315319 (-)
G138659 NA non-coding upstream 53018 37331037 ~ 37331568 (-)
G138661 NA non-coding upstream 54028 37332047 ~ 37332298 (-)
G138080 NA other downstream 446223 36825792 ~ 36828397 (-)
G137839 LOC106605146 other downstream 635615 36634193 ~ 36639005 (-)
G137479 NA other downstream 904292 36370004 ~ 36370328 (-)
drd2l LOC106582624 other downstream 1598915 35674291 ~ 35700846 (-)
G139231 NA other upstream 469422 37747441 ~ 37752958 (-)
LOC110489105 LOC106605178 other upstream 768683 38046700 ~ 38048666 (-)
G140479 NA other upstream 1549890 38827909 ~ 38828195 (-)
G140879 NA other upstream 1785843 39063862 ~ 39064418 (-)

Expression


Co-expression Network