G140846 (LOC106605103)


Basic Information

Item Value
gene id G140846
gene name LOC106605103
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39001366 ~ 39002616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU161883
TATTACTGTCGCCCTTATCCTTGAAATAGGGAACATAGCGGACCATCCAATCATAGACCTGTGAAAGCGTGAGTCTTTTTTCAGGGGTGCTTTCAATGGCTCGTGTGATAAGGTCCGCGTACGACTGGTTACCCCATGCGTTCCGCCGCGAGGATTTGGCTTTGCGCAATTGTCCAGTCACATCAAGTGCCGCGCTGGCCAAGCATGGGTGCGTCGCCCGGATGGGAGCCGGGGCGACTGCTGGATGCTTCAGCTCGGTCGGCGTGCCACCCATTCTCCCCGCTCTGCACGCTGAAACGGCTAGATTGTCATCTGGTTCCACCTTGATGGTCGTCAGTTGAAGACCCCCATTGACCTCCTGCACTTCGGGGAAATCCTCCGGACAAGGCAGTGGCCAAGTGCACGAGCGAGGCCGGCTTTGCGGCTCGAAATCCGAATCGATATCAACCTGATGAGCCAATTCGTCGTCCTCCATCATCAACATTTATCCTCAGTTGTGAAGGAATAACCGGGTTAGAAAGAAATACAATACCTCCACTATTCCCGTATTGTCTCCAATACTAGGCCTACTTCAAACCGAAATCCGTCTCGTGACGAGGATATTACAGTCTGATTCAATAAAGTAACGATCAAATCTCAAGAGAAGCCGGCTGCTGTGGAGATTGATAATGTTGAATAGCTCGTCTGCAGTGGGCTATCACCGACCCGAATGTAACGATAAGAGTAGCAATAATAGTAACAATAATCGTTCTCCCATTTTACCtgaaataaaacatgttcaatttggggAATTGTGAATTGCCTACATCTCCAGCAGCTAGAGTCAATCCAAATGCATGACAGTGTCAGTTCATCCGGCTGCAGCAACAGATGATACCTCATATAACGAGAATAGAGATGCAGGAGGCGTCGAAAGGATCCGAAAAAACATTAGACAATGATAATTTTAAATCAACAGGATTGTGCAGACAGCACAGACAAGCGATGATGTGTGATTATCGCAAATTATTAAATATTCCAGTCTTCACGGAATAGGCTGGCAAATGCAAATCCattcacagtcacacacaaacgATTCCGAATTCAACTGCAatgatactttttttttaaaaaatcggGTCGCATGTGTCTTTTAAAAAAGCGACACACTTCCAGACATTGCACAGTCCAGCATCAGTCTGTTGTTGTCCATTTGATAAATAATTGTAACACACGTATTGCTCGCCTCTAGTATTTCTAACATGTAGTCAG

Function

NR:

description
forkhead box protein O6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161883 True 1251 lncRNA 0.44 1 39001366 39002616

Neighbor

gene id symbol gene type direction distance location
LOC110489261 LOC106605105 coding downstream 17394 38975605 ~ 38983972 (-)
LOC110489249 LOC106605107 coding downstream 37586 38952824 ~ 38963780 (-)
LOC110489192 LOC106605112 coding downstream 109320 38858506 ~ 38892046 (-)
LOC110489186 NA coding downstream 147108 38852233 ~ 38854258 (-)
LOC110489143 LOC106605116 coding downstream 250137 38738678 ~ 38779271 (-)
LOC110489287 LOC106605101 coding upstream 195050 39197666 ~ 39209506 (-)
LOC118939935 LOC106605099 coding upstream 215935 39218551 ~ 39220640 (-)
LOC110489325 tpi1b coding upstream 226196 39228812 ~ 39233769 (-)
LOC110489429 LOC106605091 coding upstream 335573 39338189 ~ 39347511 (-)
LOC110489468 LOC106605089 coding upstream 348316 39350932 ~ 39365872 (-)
G140506 ppp1r8 non-coding downstream 12293 38970629 ~ 38989073 (-)
G140560 mecr non-coding downstream 67138 38933850 ~ 38934228 (-)
G140511 NA non-coding downstream 82790 38875460 ~ 38918576 (-)
G140498 NA non-coding downstream 144346 38856703 ~ 38857020 (-)
G140496 NA non-coding downstream 145258 38855888 ~ 38856108 (-)
G140857 NA non-coding upstream 16646 39019262 ~ 39019499 (-)
G140862 NA non-coding upstream 24951 39027567 ~ 39027804 (-)
G140871 NA non-coding upstream 38910 39041526 ~ 39041636 (-)
G140870 NA non-coding upstream 40659 39043275 ~ 39044478 (-)
G140876 NA non-coding upstream 54053 39056669 ~ 39056906 (-)
G140479 NA other downstream 173171 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 952700 38046700 ~ 38048666 (-)
G139231 NA other downstream 1248408 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1537608 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 2152021 36844929 ~ 36849373 (-)
G140879 NA other upstream 61246 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 761317 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 1222006 40224622 ~ 40298333 (-)
G142918 NA other upstream 1860598 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2711930 41714269 ~ 41730507 (-)

Expression


Co-expression Network