RNA id: TU161883


Basic Information

Item Value
RNA id TU161883
length 1251
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G140846
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39001366 ~ 39002616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTACTGTCGCCCTTATCCTTGAAATAGGGAACATAGCGGACCATCCAATCATAGACCTGTGAAAGCGTGAGTCTTTTTTCAGGGGTGCTTTCAATGGCTCGTGTGATAAGGTCCGCGTACGACTGGTTACCCCATGCGTTCCGCCGCGAGGATTTGGCTTTGCGCAATTGTCCAGTCACATCAAGTGCCGCGCTGGCCAAGCATGGGTGCGTCGCCCGGATGGGAGCCGGGGCGACTGCTGGATGCTTCAGCTCGGTCGGCGTGCCACCCATTCTCCCCGCTCTGCACGCTGAAACGGCTAGATTGTCATCTGGTTCCACCTTGATGGTCGTCAGTTGAAGACCCCCATTGACCTCCTGCACTTCGGGGAAATCCTCCGGACAAGGCAGTGGCCAAGTGCACGAGCGAGGCCGGCTTTGCGGCTCGAAATCCGAATCGATATCAACCTGATGAGCCAATTCGTCGTCCTCCATCATCAACATTTATCCTCAGTTGTGAAGGAATAACCGGGTTAGAAAGAAATACAATACCTCCACTATTCCCGTATTGTCTCCAATACTAGGCCTACTTCAAACCGAAATCCGTCTCGTGACGAGGATATTACAGTCTGATTCAATAAAGTAACGATCAAATCTCAAGAGAAGCCGGCTGCTGTGGAGATTGATAATGTTGAATAGCTCGTCTGCAGTGGGCTATCACCGACCCGAATGTAACGATAAGAGTAGCAATAATAGTAACAATAATCGTTCTCCCATTTTACCtgaaataaaacatgttcaatttggggAATTGTGAATTGCCTACATCTCCAGCAGCTAGAGTCAATCCAAATGCATGACAGTGTCAGTTCATCCGGCTGCAGCAACAGATGATACCTCATATAACGAGAATAGAGATGCAGGAGGCGTCGAAAGGATCCGAAAAAACATTAGACAATGATAATTTTAAATCAACAGGATTGTGCAGACAGCACAGACAAGCGATGATGTGTGATTATCGCAAATTATTAAATATTCCAGTCTTCACGGAATAGGCTGGCAAATGCAAATCCattcacagtcacacacaaacgATTCCGAATTCAACTGCAatgatactttttttttaaaaaatcggGTCGCATGTGTCTTTTAAAAAAGCGACACACTTCCAGACATTGCACAGTCCAGCATCAGTCTGTTGTTGTCCATTTGATAAATAATTGTAACACACGTATTGCTCGCCTCTAGTATTTCTAACATGTAGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161507 lncRNA downstream 12293 38970629 ~ 38989073 (-) True G140506
TU161563 lncRNA downstream 67138 38933850 ~ 38934228 (-) True G140560
TU161512 lncRNA downstream 82790 38875460 ~ 38918576 (-) True G140511
TU161499 lncRNA downstream 144346 38856703 ~ 38857020 (-) True G140498
TU161497 lncRNA downstream 145258 38855888 ~ 38856108 (-) True G140496
TU161894 lncRNA upstream 16646 39019262 ~ 39019499 (-) True G140857
TU161899 lncRNA upstream 24951 39027567 ~ 39027804 (-) True G140862
TU161908 lncRNA upstream 38910 39041526 ~ 39041636 (-) True G140871
TU161907 lncRNA upstream 40659 39043275 ~ 39044478 (-) True G140870
TU161913 lncRNA upstream 54053 39056669 ~ 39056906 (-) True G140876
XM_021561924.2 mRNA downstream 17394 38975605 ~ 38983972 (-) True LOC110489261
XM_021561889.2 mRNA downstream 37586 38952824 ~ 38963780 (-) True LOC110489249
XM_021561900.2 mRNA downstream 37587 38952824 ~ 38963779 (-) False LOC110489249
XM_021561909.2 mRNA downstream 42375 38952824 ~ 38958991 (-) False LOC110489249
XM_021561815.2 mRNA downstream 109320 38858506 ~ 38892046 (-) True LOC110489192
XM_036947875.1 mRNA upstream 195050 39197666 ~ 39209101 (-) False LOC110489287
XM_036947873.1 mRNA upstream 195050 39197666 ~ 39209108 (-) False LOC110489287
XM_036947874.1 mRNA upstream 195050 39197666 ~ 39209108 (-) False LOC110489287
XM_036947872.1 mRNA upstream 195050 39197666 ~ 39209110 (-) False LOC110489287
XM_021561994.2 mRNA upstream 195050 39197666 ~ 39209297 (-) False LOC110489287
TU161480 other downstream 173171 38827909 ~ 38828195 (-) True G140479
TU160233 other downstream 952700 38046702 ~ 38048666 (-) False LOC110489105
TU160230 other downstream 952758 38046702 ~ 38048608 (-) False LOC110489105
TU161916 other upstream 61246 39063862 ~ 39064418 (-) True G140879
TU162487 other upstream 761317 39763933 ~ 39765170 (-) False G141363
TU162488 other upstream 761317 39763933 ~ 39765423 (-) False G141363
TU162490 other upstream 761891 39764507 ~ 39765170 (-) False G141363
TU162491 other upstream 761891 39764507 ~ 39765473 (-) True G141363

Expression Profile